Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 248 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 182 / 3e-49 Calcium-binding EF-hand family protein (.1) AT2G34030 166 / 9e-44 Calcium-binding EF-hand family protein (.1) AT2G34020 167 / 1e-43 Calcium-binding EF-hand family protein (.1) AT1G29025 162 / 3e-42 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375300 [exp] 1273 / 0 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375500 [exp] 274 / 7e-83 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.004G052800 [exp] 203 / 6e-57 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028144 [exp] 261 / 4e-79 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10042848 [exp] 262 / 4e-78 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10033629 [exp] 259 / 8e-78 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10017657 [exp] 251 / 3e-74 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.001G375400.1 pacid=42791827 polypeptide=Potri.001G375400.1.p locus=Potri.001G375400 ID=Potri.001G375400.1.v4.1 annot-version=v4.1 ATGGAAATGAGGCTTATCTCAAAAACTGTATGTTTTATACTTTTTCTTCTTTTAACTGTTCGTATAAACGTTAAAGGCCGCTCTCTGGCACACAGCTCTG TTGAATTACTGGTTTCAGATGGCATCAATGATGTCCAAGAAAACCAATCTTCCATTCTACTTCTCAAAGGAATGGATTCTTCCTCTGAAGAGAAGTGTGA GCAATTGTATGGCTTCTTGCCGTGCTCCAGTAATATTTTTGGGCATCTCTTTCTAATTGCAGTGTATGAATATATGTTGTTCCATGGAGAGGGCTACTTG GCCTCTGGAGGTGAGAAGATTTTCAGGATTCTTGGACCTGGTGTCTTCGGTGCCAGTGCATTCCAGGTTCTTGGAGCCCTTCCCGAGTCCTTGATACTTC TAGCATCTGGATTATTGAACACAAGGGAAGTTGCTCAAGAGTACGTGTCTACAGGAGTCGGACTCCTCGCAGGAACATCTATTTTGCTTCTAACAATGCT CTGGGGCACCTGTGTGATCGTTGGCAGCGTTCAATCGTCAAAGCCAACCATTTCCAATACTTCAAGCTCAAGATTATTATCATGGTTTACTGAGTTTAGA GTCACTACGGATTTGCAGACAAGCTACACAGCAAGGATTATGGGTCTCTCTGTCATACCATTTCTTATTTTGCAAATCCCAAAAGTTTTCAACTCAAATT CTGGGGAATACTTGACGGTATTGATCTCTCTTGTTGTTTCAGTGGCTTCTCTGTTGATATATTTCTTCTATCAGATCTTCGAACCGTGGATTCAAAAGAG AAGACTGGAATATGTAAAATGTAATGAAGGTCTTTTAAGAATTCTGCAACTTGTGCAAGAACGTGCTTTAGGGATAATTCTGACAGGAGATGGGGCTCCA AATATAAATGCTATACAGAGACTATTTGAGGAAATAGATGAAGATGGTGATGACTGTATATCGCCCTCTGAAGTGAGGAAACTTCTGCTCGACATAAAGT CTACAGGAATGAATATCAATAAAGACAGCGCATCAGAAGAATTAATCAAAGTATTAGATCTGAATGATGATAAGAAAATAACCAAGGAAGAATTTGTCCA TACTTTTACAAAATGGCTTGAAGAGACAAAGTATGCTATGGAGAAGCGATACTTCACAATTAACTCCTTGAAGAGGATTGATCAGGTTTTTCATCCGTTC GTAGAAAGTAAAAGAAAAGAACGTGAGATGAAGAGAAATCTCATGTCAGAAATCGTGAGTCATCTACAGAGCGTTGCTTTAGGAAACCTAATCAAAGAAG ATGGTACTCCGGATTTACTTGCTATTAGAAGGTTGTTTGAAGACATTGATCGTGATGAAGATAATTGCATATCAAAAGATGAGTTAAAAGAACTAATGAA AAAGATTGAGATTGGTAAGATCTCTTGGGATGTAGATGAAGCAGCTGAAAAAATCATAGAAGCACTTGACACGAGCGGAGATCAAATGATCGATGAGAAG GAGTTCGCCGAGGGAATTGTAAGGTGGTCGATTAACCCGCCGGAAAATGTAACTCCTGTATCAACTCGGTCCCAAGATGATAACAATCGAAGAACGCCCT GGGAAGAAGTGGACAAGTTATTGAAGGATGAAAAAACCAATGCTGTTGACAAATCATCATGGGCTTGGTTTAAGGCTATAATGTCTATGGTGCTTGGAGT TGCTATATTATCAGTGCTAGCAGAGCCGCTGACACAGAGTGTTCAGAATTTCTCCGAGGATGCAGGGATACCATCTTTTTTTGTCTCCTTTGTGTTAGCT CCACTCGCAACCAACGCAAGAGCAGCCACTTCAGCTATCACGACTGCCTGTCGTAAGAAGTCTATAACCACTTCCTTGACATTTTCCGAGATTTATGGTG GGGTGTTCATGAACAATGTTCTTGGCTGTTCTGTTCTTCTATTTCTAGTTTATGCTCGTGGATTGACATGGGAATTCTCCGCTGAAGTACTGGTTGTGCT AATTACTTGTGCTATAATGAGTCTCGCCGTAAGCTTTCGCTCCGATTTCCCATTATGGACATCATTCATGGCATTCCTCTTGTATCCATTTTCTCTGTTC CTTGTTTATGTTTTCAACGATGTTCTTGATCATGTTTAG
AA sequence Show only first row Show all	>Potri.001G375400.1 pacid=42791827 polypeptide=Potri.001G375400.1.p locus=Potri.001G375400 ID=Potri.001G375400.1.v4.1 annot-version=v4.1 MEMRLISKTVCFILFLLLTVRINVKGRSLAHSSVELLVSDGINDVQENQSSILLLKGMDSSSEEKCEQLYGFLPCSSNIFGHLFLIAVYEYMLFHGEGYL ASGGEKIFRILGPGVFGASAFQVLGALPESLILLASGLLNTREVAQEYVSTGVGLLAGTSILLLTMLWGTCVIVGSVQSSKPTISNTSSSRLLSWFTEFR VTTDLQTSYTARIMGLSVIPFLILQIPKVFNSNSGEYLTVLISLVVSVASLLIYFFYQIFEPWIQKRRLEYVKCNEGLLRILQLVQERALGIILTGDGAP NINAIQRLFEEIDEDGDDCISPSEVRKLLLDIKSTGMNINKDSASEELIKVLDLNDDKKITKEEFVHTFTKWLEETKYAMEKRYFTINSLKRIDQVFHPF VESKRKEREMKRNLMSEIVSHLQSVALGNLIKEDGTPDLLAIRRLFEDIDRDEDNCISKDELKELMKKIEIGKISWDVDEAAEKIIEALDTSGDQMIDEK EFAEGIVRWSINPPENVTPVSTRSQDDNNRRTPWEEVDKLLKDEKTNAVDKSSWAWFKAIMSMVLGVAILSVLAEPLTQSVQNFSEDAGIPSFFVSFVLA PLATNARAATSAITTACRKKSITTSLTFSEIYGGVFMNNVLGCSVLLFLVYARGLTWEFSAEVLVVLITCAIMSLAVSFRSDFPLWTSFMAFLLYPFSLF LVYVFNDVLDHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375400 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	3.74	0.9596
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375300 [exp]	5.29	0.9485
AT3G09050			unknown protein		Potri.006G096700 [exp]	7.07	0.9649
AT4G25040			Uncharacterised protein family...		Potri.017G062100 [exp]	8.36	0.9517
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	9.74	0.9570
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	11.22	0.9566
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.007G057200 [exp]	12.64	0.9572
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	13.30	0.9574
					Potri.017G111225 [exp]	15.81	0.9487
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	18.76	0.9512

Compare expression of checked genes

Potri.001G375400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.