Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 665 / 0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 234 / 2e-69 Calcium-binding EF-hand family protein (.1) AT1G29025 213 / 3e-61 Calcium-binding EF-hand family protein (.1) AT2G34030 207 / 2e-59 Calcium-binding EF-hand family protein (.1) AT2G34020 206 / 2e-58 Calcium-binding EF-hand family protein (.1) AT1G21550 43 / 0.0001 Calcium-binding EF-hand family protein (.1) AT1G24620 42 / 0.0003 EF hand calcium-binding protein family (.1) AT3G47480 42 / 0.0003 Calcium-binding EF-hand family protein (.1) AT1G05990 41 / 0.0004 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT1G55720 42 / 0.001 ATCAX6 cation exchanger 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052800 [exp] 319 / 6e-102 AT1G53210 313 / 2e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375400 [exp] 250 / 4e-74 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375300 [exp] 243 / 2e-71 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.011G166900 [exp] 46 / 5e-05 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.010G249200 [exp] 45 / 0.0001 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.002G239100 [exp] 43 / 0.0001 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G126200 [exp] 43 / 0.0001 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 43 / 0.0002 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.014G030100 [exp] 41 / 0.0002 AT1G18210 54 / 2e-10 Calcium-binding EF-hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042848 [exp] 691 / 0 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10017657 [exp] 504 / 2e-173 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10028144 [exp] 452 / 2e-154 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10033629 [exp] 397 / 2e-132 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10004330 [exp] 45 / 4e-05 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 44 / 5e-05 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10032889 [exp] 45 / 0.0001 AT3G13320 434 / 7e-151 cation exchanger 2 (.1) Lus10009127 [exp] 43 / 0.0003 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10033396 [exp] 44 / 0.0004 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 44 / 0.0004 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.001G375500.1 pacid=42793264 polypeptide=Potri.001G375500.1.p locus=Potri.001G375500 ID=Potri.001G375500.1.v4.1 annot-version=v4.1 ATGAGGAACAGTTTCAGTTTTAACAGACGCCACCTCGTCCTCACCATCCCAATCCTCCTCCTCCTCCTCCTAATCACAACCGTGCATTCACGTTACTCCC CCTTTGATCCGTCTGATCTAATCTCCGATGGCGTCCACAACAATCAGTCCCTTAATCAAACTACATCATCGCCTTTCCATCTCGCCCTCAAGAGTAGTGC AGAGGAGACGTGCGAGCAGACCTACGGCTTCCTGCCCTGCACTACGACGGTGATTGGAAACTTGTTTTTGATTCTCGTCTATGGCTACTTGATGTTCTTT GCCGCTACATATCTGTCTAGTGGGAGTGAGCTTTTGCTTCAGATTCTGGGACCTGGTATTATTGGTGGCTTGTTTCTTCCCGTCCTTGGTGCTCTTCCTG ATGCATTGCTCATTCTCGTTTCTGGACTTTCTGGAAGTACTGAAACTGCTCAAAGCCAGGTCTCGGTTGGAATGGGCTTGTTGGCCGGGTCAACTGTAAT GCTTCTTACAGTTATCTGGGGATCGTGTGTTGTTGTCGGAAAATGTGACATGAGTGAGACAGAAAACTCTGCAATAGACCGAAAGGACACAAAAAGATTC AGCCTAACTGGCAGTGGAGTTAGTACTGATATTTGGACATGCTATGCTGCAAGAATAATGGCTATATCTATTCTTCCATTTATTGTTGTTCAACTACTGC AAACCCTCCATTCAACTTCAGGAAAGCACTTAGCAGTCTTGATTGGGCTAATTTTATCTCTTGCTATCTTGATATCTTACTGTCTTTACCAGGTCTTTCA GCCTTGGATCCAGGAGAGAAAACTTAAGTATACAAGGCACAAACTTGTGATGTCAGGAATTTTAAAGCATTTAAAACAGCGTGCTTTAGGAAGGCTTTTG GCTGATGACAGTTCACTGGATGAAAGTGTCGTACAAAAGTTGTTCAACACTATTGATGAGAATGGTGATGGTTGCCTTTCTGCTTCTGAATTAAAGGCAC TGGTCATAGGAATCCGGTTTGAAGAGATAGACTTCGACAAGGATGATGCTGTTTCTAAATTAATTAAAGATTTTGACAAAACTAATGATAATCTTATTAA TTTTAGGGAGTTCATTAATGGTATCCAAAAATGGCTTGATGAGGCAATGCGTGTAGGAGGTGGCTCTCCTGACCCTGGTCCCCGGACACATAAGTACTTG GATAACTTTCATGATAAAACAAAGAAAGCACACGCTCTATTGGGGTCTAAGGAACCAGAGGAGGGAGAGAGTGATGGGGGAGTCAAAAACCCCAGGTGGA CGTCCTTCAAAGCATCACTGATGTTGTTGGCTGGTGCTGTTATTGCTGCTGCTTTCGCGGATCCTCTGGTGGATGCTGTTGACAATTTCTCTGATGCAAC AAGTATTCCTACTTTCTTCATCTCATTTATTGCTCTTCCGTTGGCTACCAACTCTAGTGAAGCTGTATCAGCAATCATTTTCGCTAGCCGTAAGAAAGTC ACCACTGCCTCGTTAACATTTTCTGAGCTATATGGGGCAGTCACTATGAATAATGTCCTTTGCCTATCAGTGTTCTTGGCCCTTGTTTACTTCAGGGAAT TGACCTGGGACTTCTCAGCTGAAGTGCTGGTTATTTGTATTGTGTGCATCGTGATGGGCGCCTTTGCCAGCTTCCGCACCACATTTCCTCTCTGGACCTG TTTTCTGGCATACTTCCTGTATCCATTCTCTCTGGTACTGGTCTATGTTCTTGATTATGTCTTGGGTTGGTCATAG
AA sequence Show only first row Show all	>Potri.001G375500.1 pacid=42793264 polypeptide=Potri.001G375500.1.p locus=Potri.001G375500 ID=Potri.001G375500.1.v4.1 annot-version=v4.1 MRNSFSFNRRHLVLTIPILLLLLLITTVHSRYSPFDPSDLISDGVHNNQSLNQTTSSPFHLALKSSAEETCEQTYGFLPCTTTVIGNLFLILVYGYLMFF AATYLSSGSELLLQILGPGIIGGLFLPVLGALPDALLILVSGLSGSTETAQSQVSVGMGLLAGSTVMLLTVIWGSCVVVGKCDMSETENSAIDRKDTKRF SLTGSGVSTDIWTCYAARIMAISILPFIVVQLLQTLHSTSGKHLAVLIGLILSLAILISYCLYQVFQPWIQERKLKYTRHKLVMSGILKHLKQRALGRLL ADDSSLDESVVQKLFNTIDENGDGCLSASELKALVIGIRFEEIDFDKDDAVSKLIKDFDKTNDNLINFREFINGIQKWLDEAMRVGGGSPDPGPRTHKYL DNFHDKTKKAHALLGSKEPEEGESDGGVKNPRWTSFKASLMLLAGAVIAAAFADPLVDAVDNFSDATSIPTFFISFIALPLATNSSEAVSAIIFASRKKV TTASLTFSELYGAVTMNNVLCLSVFLALVYFRELTWDFSAEVLVICIVCIVMGAFASFRTTFPLWTCFLAYFLYPFSLVLVYVLDYVLGWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53210			sodium/calcium exchanger famil...		Potri.001G375500 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	6.08	0.8802	CESA.2
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.016G055300 [exp]	8.00	0.7610
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	8.71	0.8389
AT2G22120			RING/FYVE/PHD zinc finger supe...		Potri.007G085900 [exp]	11.18	0.8297
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	12.88	0.8576	Pt-CESA2.1
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	15.09	0.8492
AT1G13900			Purple acid phosphatases super...		Potri.010G160500 [exp]	17.74	0.8210
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Potri.009G121400 [exp]	29.18	0.6855
AT5G43150			unknown protein		Potri.010G088200 [exp]	34.46	0.8082
AT2G40280			S-adenosyl-L-methionine-depend...		Potri.010G185000 [exp]	35.66	0.8114

Compare expression of checked genes

Potri.001G375500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.