Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052900 [exp] 67 / 8e-12 AT2G34010 / unknown protein Potri.006G161100 [exp] 41 / 0.0006 AT2G20080 102 / 2e-27 unknown protein Potri.011G097050 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042849 [exp] 61 / 2e-09 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028146 [exp] 57 / 2e-08 ND 41 / 0.002 Lus10013688 [exp] 47 / 2e-05 AT1G29010 49 / 2e-06 unknown protein Lus10034960 [exp] 43 / 9e-05 AT2G20080 74 / 5e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G375600.1 pacid=42790867 polypeptide=Potri.001G375600.1.p locus=Potri.001G375600 ID=Potri.001G375600.1.v4.1 annot-version=v4.1 ATGGCTCAAGAAGAACAAACCAAGAAATGTAACACTAGTAGTGATGGTAATGGTGATGGTGGTTTTAGAAGTGGCCACATTAGTAGATCTTCTAGGAAGC ACAAGCAAAAGAAAGTGCCACAAAGAGGGCTTGGTGTTGCACAACTAGAGAAGATAAGACTAGAAGAGCAACAAAAGAACGATGTCTCTGTAAATCTGCC TTCTCCAGCTTCTATATCACAAATTAAGCCTTCCAATCGGAAAATTCGGTATCTCTCTATGCCAATTCCAAATGTTTATGAATCTCGTTCTACTTCAATC CCATATCTTCCTGATCTCTCATCTCCAAATTCAATGTTTAGGCCCCAGAATATAGAACTAATCAACTCAAACAGTACTATTCCATCGGAAAATTCGGTGG GGTGGCAATCAGCTGCTGTTCAAGGGCAAAAAAATGTGCCTAAGATGTGGAATTCTAGTGATTACAATCTTGAAAAGGAAAATTGTGGGGTTGATCCTGC ACTTGCTTTTCGGTCTAATTTGAATTTACCTTATGAATCCAACCCCATTTGGCCTCTTCCTAGTTTGATGCAAAGAGCACAGCAACATGGACAACATTCT TCTTCTTCTTCATGCTCAATGGTAAATGCCTCGTCAGGAAGTTCATCATCATCTTTGCAAAATCCTCAGATGGAGCCCCCTTCAAACCAAAGCTATTATG ACAACTATGTACCTGTTTGGATAGAGGAAGAGAAGATGGTTAGCAAGAAGAGACCGCATCCCTTTTCGCTAGGCTATCCACCAGGTTCTTCTTCCCACTG CTACAAGTGTCCCACAAATACCTCATTTGGCAATGGAGGCTTGTATAATTTCAGTTTCAGCAGCCGAAATTGCAGAGAAGACTCCTCGTGTTCTACTTGT ATCTTGGAGCCCACTTCAAAGAAAATCATCAAAGAAAATGGGGCATGCAATGCAGATTTCCTCACTCCAGCCCCTCCTCCTGCTACAACTTTGACATCTA CAGACTTCAAGCTCAAGCCTTCAGCTTATCTGGACTTCCATAACTTTGAATCCTTTGATTTCGATTCACTGCCGTATCAAGGTAACGTGGAAGATCGAAT TCTCCAGCAGCCAGGAGCAATTGTACCAAATCAACAGCAGACCTACTATTGCTTCCTGCCCCCAGCAATAATGCAAATTGGCCATCCAACAAAGTCTAGT AATGATTACACTGGTGATGAAGTAGGGGAAAATATTGATTTGAATTTGAAGTTATGA
AA sequence Show only first row Show all	>Potri.001G375600.1 pacid=42790867 polypeptide=Potri.001G375600.1.p locus=Potri.001G375600 ID=Potri.001G375600.1.v4.1 annot-version=v4.1 MAQEEQTKKCNTSSDGNGDGGFRSGHISRSSRKHKQKKVPQRGLGVAQLEKIRLEEQQKNDVSVNLPSPASISQIKPSNRKIRYLSMPIPNVYESRSTSI PYLPDLSSPNSMFRPQNIELINSNSTIPSENSVGWQSAAVQGQKNVPKMWNSSDYNLEKENCGVDPALAFRSNLNLPYESNPIWPLPSLMQRAQQHGQHS SSSSCSMVNASSGSSSSSLQNPQMEPPSNQSYYDNYVPVWIEEEKMVSKKRPHPFSLGYPPGSSSHCYKCPTNTSFGNGGLYNFSFSSRNCREDSSCSTC ILEPTSKKIIKENGACNADFLTPAPPPATTLTSTDFKLKPSAYLDFHNFESFDFDSLPYQGNVEDRILQQPGAIVPNQQQTYYCFLPPAIMQIGHPTKSS NDYTGDEVGENIDLNLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G375600 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.010G049800 [exp]	9.74	0.7126
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Potri.005G121200 [exp]	19.44	0.7510
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.001G063709 [exp]	27.56	0.7469
AT5G03330			Cysteine proteinases superfami...		Potri.006G125900 [exp]	28.24	0.7107
AT2G42320			nucleolar protein gar2-related...		Potri.016G051500 [exp]	50.21	0.7266
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	53.44	0.7190
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G013800 [exp]	56.86	0.7105
AT3G08650			ZIP metal ion transporter fami...		Potri.006G111200 [exp]	62.99	0.7009
AT1G30820			CTP synthase family protein (....		Potri.003G157900 [exp]	70.74	0.6809
AT2G26110			Protein of unknown function (D...		Potri.001G008160 [exp]	78.11	0.7070

Compare expression of checked genes

Potri.001G375600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.