Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15050 244 / 1e-80 IQD10 IQ-domain 10 (.1) AT2G33990 196 / 2e-61 IQD9 IQ-domain 9 (.1) AT2G26180 127 / 1e-33 IQD6 IQ-domain 6 (.1) AT3G22190 127 / 2e-33 IQD5 IQ-domain 5 (.1.2) AT3G52290 117 / 1e-29 IQD3 IQ-domain 3 (.1) AT1G72670 115 / 3e-29 IQD8 IQ-domain 8 (.1) AT2G26410 115 / 8e-29 IQD4 IQ-domain 4 (.1) AT5G03040 108 / 2e-26 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 100 / 1e-23 IQD1 IQ-domain 1 (.1.2) AT1G17480 93 / 3e-21 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096500 [exp] 447 / 2e-159 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.011G063200 [exp] 261 / 4e-86 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.004G053000 [exp] 253 / 5e-83 AT2G33990 236 / 5e-77 IQ-domain 9 (.1) Potri.006G226600 [exp] 143 / 3e-39 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G215200 [exp] 130 / 1e-34 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 130 / 2e-34 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G131100 [exp] 120 / 6e-31 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 120 / 8e-31 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 116 / 3e-29 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025425 [exp] 191 / 8e-59 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 187 / 3e-57 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10013362 [exp] 136 / 7e-37 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10041419 [exp] 126 / 4e-33 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10004107 [exp] 123 / 8e-32 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10036508 [exp] 123 / 1e-31 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 118 / 4e-30 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10019916 [exp] 114 / 2e-28 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 108 / 3e-26 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10014870 [exp] 91 / 6e-20 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G375700.1 pacid=42790679 polypeptide=Potri.001G375700.1.p locus=Potri.001G375700 ID=Potri.001G375700.1.v4.1 annot-version=v4.1 ATGGGTTGTCTCTTCTCTGGGAACTGGTTGAAGTCAATTATAAGAACGAGAAAGGCGAAGAAAGATGCATCAAAGAAAGTAAAGGTACACTCGGCTACCG AAAAGGCAAACGGGTCAAAGGAGAGCTCACCCGCCCATGGAGAATCAAGTAATCTTGCCAATGGTGATTTGGAGAGCAATATTCATGTTGCTCCTGGATT GTCTGCTGAATATATAGCTGCTGTCAGGATTCAAGATGCTTTTCGGGCATACAAGGCAAGAAAAGCAATGCACCGTCTTAAGGGCGCCGTGAGGTTCAAT GTGCTGATTCATGGTCATGACACTCAAAAGCAAGCTTCAAGCACATTAAGCCATATTCATTCATGGAGCAACATACAGGCACAGATTAGAGCCCGCCGGC ACCATATGGTCACCGAAGGCCGTATCAAGCAAAAGAAATTAGAAAACCAGTTGAAACTCGAGGCCAGACTTCAAGAGATTGAGGTGGAGTGGTGCGGTGG CTCCGATACCATGGAGGAAATCCTTTCCAGGATCCAGCAAAGAGAAGAAGCAGCAGTAAAGCGTGAACGAGCCATGGCATATGCCTTCTCTCATCAGTGG AGAGCCAACCCTACCCAATATCTAGGCCAGGCCTATTACAGCCTTGGCAAAGAAAACTGGGGTTGGAGCTGGAAGGAGCGCTGGATTGCTGCTCGGCCAT GGGAGATTAGGGTTCATGCTGAGCTTCATAACCTCAAGAAAGCTCATCCAAAGCAAGAGAGCAAAACGACACTTCCAACCAAACCTGCTTTGTCAAATGG GAAGGTGACTGCTAAATCTAAAATGTTGCCTAGCCCAGCTGTGGATTGTCAAGCTGCCCAGGTTGCCAGTTCTACAGCCGGCTCGTCTCATCTGCTGATT CCAAGTTGA
AA sequence Show only first row Show all	>Potri.001G375700.1 pacid=42790679 polypeptide=Potri.001G375700.1.p locus=Potri.001G375700 ID=Potri.001G375700.1.v4.1 annot-version=v4.1 MGCLFSGNWLKSIIRTRKAKKDASKKVKVHSATEKANGSKESSPAHGESSNLANGDLESNIHVAPGLSAEYIAAVRIQDAFRAYKARKAMHRLKGAVRFN VLIHGHDTQKQASSTLSHIHSWSNIQAQIRARRHHMVTEGRIKQKKLENQLKLEARLQEIEVEWCGGSDTMEEILSRIQQREEAAVKRERAMAYAFSHQW RANPTQYLGQAYYSLGKENWGWSWKERWIAARPWEIRVHAELHNLKKAHPKQESKTTLPTKPALSNGKVTAKSKMLPSPAVDCQAAQVASSTAGSSHLLI PS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15050		IQD10	IQ-domain 10 (.1)		Potri.001G375700 [exp]	0	1
AT3G52790			peptidoglycan-binding LysM dom...		Potri.008G030200 [exp]	1.00	0.9531
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.006G005600 [exp]	1.73	0.9456
AT3G23090			TPX2 (targeting protein for Xk...		Potri.008G162800 [exp]	2.00	0.9491
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	2.44	0.9105
AT2G47500			P-loop nucleoside triphosphate...		Potri.005G021100 [exp]	3.46	0.9389
AT5G43150			unknown protein		Potri.008G152200 [exp]	5.29	0.9080
AT1G79420			Protein of unknown function (D...		Potri.010G174200 [exp]	7.41	0.9220
AT1G47410			unknown protein		Potri.002G127800 [exp]	7.61	0.8735
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.008G068400 [exp]	9.38	0.8933	Pt-PLC1.2
AT5G01430			Got1/Sft2-like vescicle transp...		Potri.007G124400 [exp]	9.48	0.8720

Compare expression of checked genes

Potri.001G375700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.