Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53230 279 / 1e-90 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 276 / 4e-89 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT2G31070 149 / 4e-41 TCP TCP10 TCP domain protein 10 (.1) AT4G18390 108 / 6e-26 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT3G02150 100 / 1e-23 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT1G30210 97 / 2e-22 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT5G60970 94 / 3e-21 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT5G08070 91 / 1e-20 TCP TCP17 TCP domain protein 17 (.1) AT1G68800 91 / 5e-20 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT1G67260 84 / 9e-18 TCP TCP1 TCP family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096600 [exp] 496 / 9e-176 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.013G119400 [exp] 212 / 2e-65 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 210 / 1e-64 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G083100 [exp] 103 / 9e-24 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.017G094800 [exp] 101 / 1e-23 AT3G02150 161 / 4e-47 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.004G116100 [exp] 99 / 7e-23 AT3G02150 173 / 1e-50 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.004G065800 [exp] 100 / 8e-23 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.015G058800 [exp] 94 / 5e-21 AT5G60970 177 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Potri.010G130200 [exp] 91 / 2e-19 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000463 [exp] 175 / 2e-50 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10023297 [exp] 102 / 1e-23 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10038512 [exp] 102 / 3e-23 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 92 / 2e-20 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10034679 [exp] 92 / 3e-20 AT5G60970 169 / 2e-49 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10032984 [exp] 89 / 1e-19 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Lus10003078 [exp] 81 / 2e-16 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10035055 [exp] 77 / 1e-15 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10042962 [exp] 79 / 2e-15 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 77 / 2e-15 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [poplar] [flax] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Potri.001G375800.1 pacid=42790104 polypeptide=Potri.001G375800.1.p locus=Potri.001G375800 ID=Potri.001G375800.1.v4.1 annot-version=v4.1 ATGGGAGAGAGCCACCACCAAGCAGCAACATCGTCAAGATTGGGGATAAGAAACACAGTGGGAGAGATTGTGGAGGTCCAAGGAGGCCACATTGTTCGGT CCACAGGAAGAAAAGACCGCCACAGCAAGGTCTGTACTGCCAAAGGCCCCAGAGACCGCCGCGTCCGGCTCTCAGCGCACACTGCCATCCAGTTCTACGA TGTGCAGGACCGCCTAGGCTACGACCGTCCCAGCAAAGCCGTCGATTGGCTCATCAAGAAAGCCAAGGCTTCCATAGACGAGCTTGCAGAGCTACCCGCA TGGGATCCAACCACAGCGGGATTCACCCGCGCAACCAGTAAAACTACAACAAGAAGCACCCAGCAACAAAACATAAGCGACGAGAGGGAGTATCAGCTTT CCATGGAAAATGTTGCCGCTTCAAAAGCAGCAGCAGCAGCAGCAATTGAAGTTCAAAATATGCAACAGCAAATGGCAGAAAATCCCGACTGTAGTTCGGG TTTTCTGCCACCATCTTTAGACTCAGATGCTATTGCTGACACAATCAAAACTTTCTTTCCAATGGGTGCTTCTACGGAGACATCGTCTCCAACTATACAG TTTCAGAACTATCCACCAGATTTGCTGTCAAGAACCAGCAGCCAGAGCCAAGATCTGAGGCTCTCGCTCCAATCATTTCAAGAACCAATTCTTTTGCAAC ATCAAGCACACCATCATGGCCATCAAGCTCAAAATGAACATCAAGTGTTCTCTGGAACCACTGCTCATTATCTCGGTCTAGATGGCTCTTCTAGTGGGTG GTCTGAGCAGCACCACACACCAGAAATCAACCGATTCCAAAGAAATTTGGTGGCTTGGAATGCAGCTGGCGGCGGCGGCGGCGGCGGAGGTGGAGGATTC TTCTTCAACACACCACTACCACCGCTACAGACGATGTCTCCATCGCCACTTATACAGCCGTTTTTCGGCCAAAACCAGTTTTTTTCACAGAGGGGACCCC TTCAGTCCAGTAACATGCCTTCAGTTCGTGCTTGGATAGACCCAGCAATCACTCCTGATCATCATGAACAACAACAAATTCCACAAATTTATCATCAGCA AACTGCAATATCAGGCATTGGATTCACTGCCTCAGGTGGTGAGTTCTATGGGTTTCGAGTTCCAGCACGAATTCAAGGCGAAGATGAGGAGCACGACGGC ATTCACAACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA
AA sequence Show only first row Show all	>Potri.001G375800.1 pacid=42790104 polypeptide=Potri.001G375800.1.p locus=Potri.001G375800 ID=Potri.001G375800.1.v4.1 annot-version=v4.1 MGESHHQAATSSRLGIRNTVGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELPA WDPTTAGFTRATSKTTTRSTQQQNISDEREYQLSMENVAASKAAAAAAIEVQNMQQQMAENPDCSSGFLPPSLDSDAIADTIKTFFPMGASTETSSPTIQ FQNYPPDLLSRTSSQSQDLRLSLQSFQEPILLQHQAHHHGHQAQNEHQVFSGTTAHYLGLDGSSSGWSEQHHTPEINRFQRNLVAWNAAGGGGGGGGGGF FFNTPLPPLQTMSPSPLIQPFFGQNQFFSQRGPLQSSNMPSVRAWIDPAITPDHHEQQQIPQIYHQQTAISGIGFTASGGEFYGFRVPARIQGEDEEHDG IHNKPSSASSDSRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G036100 [exp]	1.00	0.9688
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.008G022200 [exp]	3.16	0.9672
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142201 [exp]	4.47	0.9648
AT5G52780			Protein of unknown function (D...		Potri.004G072900 [exp]	5.00	0.9609
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	6.00	0.9655
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.016G036900 [exp]	6.00	0.9578	Pt-GLU1.1
AT1G13940			Plant protein of unknown funct...		Potri.006G262600 [exp]	7.00	0.9565
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.002G005500 [exp]	7.07	0.9535	PtrPHT1-9
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Potri.003G034700 [exp]	10.58	0.9473
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Potri.011G083100 [exp]	10.81	0.9538	PLCYC4.2

Compare expression of checked genes

Potri.001G375800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.