Plant FIBer expression Database

Potri.001G376100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73165 48 / 4e-09 CLE1 CLAVATA3/ESR-RELATED 1 (.1)
AT1G06225 37 / 7e-05 CLE3 CLAVATA3/ESR-RELATED 3 (.1)
AT2G31081 35 / 0.0004 CLE4 CLAVATA3/ESR-RELATED 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G096800
[exp]
96 / 3e-28 AT1G73165 45 / 6e-08 CLAVATA3/ESR-RELATED 1 (.1)
Potri.013G119100
[exp]
39 / 2e-05 AT2G31081 57 / 2e-12 CLAVATA3/ESR-RELATED 4 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G376100.1 pacid=42788753 polypeptide=Potri.001G376100.1.p locus=Potri.001G376100 ID=Potri.001G376100.1.v4.1 annot-version=v4.1
ATGGCTAACATGAGGGTTTTTTTATTCTTTATCCTGAGTTTGCTCTTCTTTTCGACGTTCGAAACTCGTTCAATCGACCGGATTTCACACCGGGGAGATC
GTTCATTGATAGAGAGTGCCCAAGAAATGTTGAAGGAAAGCATAGCAAGGCACGAGTTGATTGAAGGTTTTAACGAGTCTTTCAGGCTCAGTCCCGGAGG
TCCCGATCCCCGCCATCATTGA
AA sequence
>Potri.001G376100.1 pacid=42788753 polypeptide=Potri.001G376100.1.p locus=Potri.001G376100 ID=Potri.001G376100.1.v4.1 annot-version=v4.1
MANMRVFLFFILSLLFFSTFETRSIDRISHRGDRSLIESAQEMLKESIARHELIEGFNESFRLSPGGPDPRHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G73165 CLE1 CLAVATA3/ESR-RELATED 1 (.1) Potri.001G376100
[exp]
0 1
AT5G24610 unknown protein Potri.015G000900
[exp]
2.00 0.7051
AT4G38400 ATEXPL2, ATHEXP... EXPANSIN L2, expansin-like A2 ... Potri.004G181700
[exp]
6.32 0.6699 PtrEXLA1,EXLA1.2
Potri.014G135560
[exp]
10.90 0.7124
AT3G06500 A/N-InvC alkaline/neutral invertase C, ... Potri.008G101500
[exp]
18.89 0.6575
AT2G44300 Bifunctional inhibitor/lipid-t... Potri.001G232000
[exp]
24.37 0.6332
AT1G11580 ATPMEPCRA methylesterase PCR A (.1) Potri.011G025400
[exp]
28.77 0.6939
AT2G37180 PIP2C, PIP2;3, ... RESPONSIVE TO DESICCATION 28, ... Potri.016G089500
[exp]
30.98 0.5840 Pt-PIP2.2
AT2G34930 disease resistance family prot... Potri.015G025800
[exp]
33.04 0.5827
AT5G06710 HD HAT14 homeobox from Arabidopsis thal... Potri.009G023600
[exp]
33.61 0.6299
AT3G46450 SEC14 cytosolic factor family ... Potri.009G028700
[exp]
43.47 0.5790

Potri.001G376100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.