Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GTE910
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06230 266 / 9e-82 GTE4 global transcription factor group E4 (.1.2.3) AT1G73150 218 / 2e-66 GTE3 global transcription factor group E3 (.1) AT1G17790 207 / 9e-62 DNA-binding bromodomain-containing protein (.1) AT5G14270 137 / 5e-35 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2) AT5G65630 130 / 4e-33 GTE7 global transcription factor group E7 (.1) AT5G10550 130 / 1e-32 GTE2 global transcription factor group E2 (.1) AT3G27260 125 / 5e-31 GTE8 global transcription factor group E8 (.1.2) AT2G34900 119 / 7e-31 GTE1, GTE01, IMB1 IMBIBITION-INDUCIBLE 1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, Transcription factor GTE6 (.1.2) AT3G01770 124 / 8e-31 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G63320 116 / 2e-28 NPX1 nuclear protein X1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096400 [exp] 538 / 0 AT1G06230 243 / 5e-72 global transcription factor group E4 (.1.2.3) Potri.013G118900 [exp] 313 / 3e-100 AT1G06230 463 / 5e-153 global transcription factor group E4 (.1.2.3) Potri.019G090700 [exp] 303 / 2e-96 AT1G06230 443 / 2e-145 global transcription factor group E4 (.1.2.3) Potri.001G285700 [exp] 138 / 7e-36 AT1G73150 214 / 4e-63 global transcription factor group E3 (.1) Potri.009G080000 [exp] 134 / 2e-34 AT5G65630 180 / 1e-49 global transcription factor group E7 (.1) Potri.015G091800 [exp] 133 / 1e-33 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.012G094300 [exp] 132 / 2e-33 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 132 / 2e-33 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.001G355300 [exp] 127 / 1e-31 AT5G46550 201 / 5e-58 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033623 [exp] 281 / 3e-87 AT1G06230 493 / 9e-164 global transcription factor group E4 (.1.2.3) Lus10017661 [exp] 280 / 3e-86 AT1G06230 499 / 3e-165 global transcription factor group E4 (.1.2.3) Lus10033624 [exp] 280 / 3e-86 AT1G06230 494 / 2e-163 global transcription factor group E4 (.1.2.3) Lus10014609 [exp] 134 / 9e-34 AT3G27260 458 / 2e-150 global transcription factor group E8 (.1.2) Lus10032076 [exp] 134 / 1e-33 AT3G27260 450 / 6e-147 global transcription factor group E8 (.1.2) Lus10020470 [exp] 126 / 9e-33 AT5G65630 173 / 3e-49 global transcription factor group E7 (.1) Lus10007096 [exp] 129 / 2e-32 AT1G06230 213 / 1e-62 global transcription factor group E4 (.1.2.3) Lus10034067 [exp] 129 / 2e-32 AT1G06230 304 / 7e-95 global transcription factor group E4 (.1.2.3) Lus10039630 [exp] 115 / 1e-27 AT5G65630 191 / 5e-54 global transcription factor group E7 (.1) Lus10011989 [exp] 108 / 2e-25 AT5G46550 244 / 3e-74 DNA-binding bromodomain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0665 [poplar] [flax] BET PF17035 [poplar] [flax] BET Bromodomain extra-terminal - transcription regulation
Representative CDS sequence Show only first row Show all	>Potri.001G376400.10 pacid=42791339 polypeptide=Potri.001G376400.10.p locus=Potri.001G376400 ID=Potri.001G376400.10.v4.1 annot-version=v4.1 ATGAATTCGAACAAGAAGTTGAAACAGTCTGGCGGTGGAGGGAAGGACGGTGGTGCGGGAAAGGGGGTGGTGGTGGAGTTTAGCAAGGATTTGGTTATAG GGTGTGGGGAGCTGTTAGGGAAGTTGATGAAACATCAATATGGGTGGGTGTTTAATGAGCCAGTGGATGCAAAGAAGTTGAAGCTGCATGATTATTATAA GATTATTAAGCATCCCATGGACTTAGGGACTGTGAAGAGTAGGTTGAGTAAGAATTGGTACAAGTCTCCAAAGGAGTTTGCTGAGGATGTTAGGTTGACG TTTAATAATGCTATGAAGTATAATGAGAAAGGGCAGGATGTGCATGCTATGGCGGATAAGTTGTTGAAGATTTTTGAGGAGAATTGGGCTAATTTTAAGG CCAAAACTAATTTTGATAAGAGGGGGGAGATGGGATTTGATGCTAGCTTGCCAACACCTGCTTTGAAGAGAGCTCCAGGTCCTCGTGCTTCGTCTCCTGC TCACGGTCCTGCTTCAAAGAGAGTTCCAGGTCCTCGTGCTTCATCCCCCACCTCTGGTCCTGCTTCTGCTTCTGCCCGTGCTCCCAGTCCTGCTTCTTTT CCACAGACAATGCCTTTAGAGACAAAAACTTTGGATAGGACAGATTCTTTGACGGAGCTTGTACATTCGAAGATGAAAGCTGCAAAAACTGTTGCCAATC AAGGCAGGACATCAGTGTTGAATAAGCCTAAGAAGAATGAAACTGTCAGAGGCGTGATGACATACGAGGAGAAGCAGAAATTGAGTATACACCTGCAGAG TTTGCCTTCAGAGAAACTAGAATCAGTTGTCCAGATTATTAGGAAGAGGAATCCTGGGCTTTTCCAACAAGAAGATGAGATTGAAGTGGATATTGATAGT TTTGATAATGAAACACTTTGGGAACTTCATGGTTATGTAACCAATTACCAGAAGAGTATGGGCAAGAATGAGAGAGAAGCTGAAGTTGCTCTTCAAGGGA GAGAAGAAGCTGGCCATAAAATGCTTGGGACTAATATGACATCTGCTACTGCAGAGGCACCAAAAGAACTTGGATCGGTACAAATGACTGTTTCTGCATC TTCTCCTGTTAAAGATCATAGGCAGGGCCATAGTATGAGCAGATCAAGTAGTTCAAGCAGTTCTGGCAGTGATTCCAGATCCTCTTCAAGTGGCTCTGAT AGTGATTCAGGATCTGGGTCAGATGCAGCTCAATGA
AA sequence Show only first row Show all	>Potri.001G376400.10 pacid=42791339 polypeptide=Potri.001G376400.10.p locus=Potri.001G376400 ID=Potri.001G376400.10.v4.1 annot-version=v4.1 MNSNKKLKQSGGGGKDGGAGKGVVVEFSKDLVIGCGELLGKLMKHQYGWVFNEPVDAKKLKLHDYYKIIKHPMDLGTVKSRLSKNWYKSPKEFAEDVRLT FNNAMKYNEKGQDVHAMADKLLKIFEENWANFKAKTNFDKRGEMGFDASLPTPALKRAPGPRASSPAHGPASKRVPGPRASSPTSGPASASARAPSPASF PQTMPLETKTLDRTDSLTELVHSKMKAAKTVANQGRTSVLNKPKKNETVRGVMTYEEKQKLSIHLQSLPSEKLESVVQIIRKRNPGLFQQEDEIEVDIDS FDNETLWELHGYVTNYQKSMGKNEREAEVALQGREEAGHKMLGTNMTSATAEAPKELGSVQMTVSASSPVKDHRQGHSMSRSSSSSSSGSDSRSSSSGSD SDSGSGSDAAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	0	1	GTE910
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	1.00	0.9004	Pt-MKP1.2
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	1.41	0.8981
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	2.44	0.8942
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	3.00	0.8845	Pt-FHY3.1
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.010G091200 [exp]	3.16	0.8828
AT3G22430			unknown protein		Potri.010G087400 [exp]	3.46	0.8941
AT1G18560			BED zinc finger ;hAT family di...		Potri.012G059200 [exp]	3.60	0.8769
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	5.56	0.8570
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.009G158400 [exp]	8.48	0.8856
AT5G28740			Tetratricopeptide repeat (TPR)...		Potri.004G035600 [exp]	8.71	0.8245

Compare expression of checked genes

Potri.001G376400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.