Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73140 640 / 0 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01360 374 / 3e-127 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40150 372 / 2e-126 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT3G55990 367 / 7e-124 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40320 359 / 2e-121 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G40160 359 / 4e-121 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01620 345 / 1e-115 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT3G11030 337 / 2e-112 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G38320 334 / 5e-112 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT3G54260 260 / 1e-83 TBL36 TRICHOME BIREFRINGENCE-LIKE 36 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119100 [exp] 380 / 7e-130 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G073300 [exp] 375 / 8e-128 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 370 / 5e-125 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G184000 [exp] 368 / 1e-124 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G069900 [exp] 367 / 1e-123 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 362 / 2e-122 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.010G187500 [exp] 360 / 4e-122 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 353 / 5e-119 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 325 / 1e-107 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042845 [exp] 592 / 0 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028141 [exp] 588 / 0 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 382 / 2e-130 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 373 / 6e-127 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028974 [exp] 370 / 3e-125 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 367 / 6e-124 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 357 / 2e-120 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10009839 [exp] 355 / 2e-119 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 354 / 4e-119 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10022676 [exp] 336 / 3e-112 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.001G376700.1 pacid=42790884 polypeptide=Potri.001G376700.1.p locus=Potri.001G376700 ID=Potri.001G376700.1.v4.1 annot-version=v4.1 ATGACGATCAAACCTTCACTTGATCGACGAATTCAAACCCTCTTCCCTGTAGCTTTAGCTTGTCTCCTTGTTTTAGGAACTGCGAGATTAGTCCTAGATA GTTTAAAGAGCAACCAGAGCTCTATCTTCAGGGTATATGGAAGGCAAGAAGGTGGCGAGTATAAAAAACCAGTCTTTGTTTTGCCAGAAGATCGGTTTGA GAAAGGGTGCGATGTTTTTGAAGGGCAATGGGTGTGGGACAATGTATCCCGCCCTCTTTATACAGAAGAAAGCTGCCCTTACCTGGTTAAACAGACCACC TGCCAAAGAAATGGTAGGCCTGATTCTTTCTACCAAGATTGGAGGTGGCAGCCTCATGCATGCAAATTGCCGAGATTTGATCCATTAAAGCTACTGGACG TTTTGAGGGGCAAAAGGCTGATGTTTATAGGAGATTCTGTACAGAGAGGCCAATTTGAATCTATGGTCTGTATGGTGCAATCTGTAATTCCTGATGGAAA AAAATCTTTTCACCGAATTCCTCCGATGAAGATCTTCAAAGCTGAGGAGTATAATGCATCGATAGAGTATTATTGGGCTCCCTTCATTGTGGAATCCATT TCAGATCATGCAACAAATCATACTGTACTAAAACGGCTGGTTAATCTCGATTCCATAGCTAAACATGGAAAGAGCTGGGAAGGCGTTGACGTGTTAGTAT TCGAGAGCTACGTTTGGTGGATGTACAAGCCTTTGATCAACGCTACACATGGATCAACAGATGACATTCAAGAATATAATGTAACCACTGCATATAAGTT AGCATTGGAAACTTGGGCAAAATGGCTAGAATCCAACATCAACTCCATCAAGCAGAAGGTGTTCTTCATGAGCATGTCTCCAACTCATTTGTGGAGTTGG GAATGGAGGCCTGGAAGCGATGAAAGCTGCTTCAATGAATCCTACCCAATTGAAGGTCCATACTGGGGCACAGGTTCAAATCTCCAGATCATGAAGATAG TTGATGATATCCTACGAGAATCGAAAATCAATGTTACTTTTTTGAATATCACCCAGTTGTCGGAATATAGAAAAGATGGCCATACAACCATCTATGGTGA ACGCAAGGGAAAGCTCTTGACAAAGGAGCAAAGATCTGATCCAAAAAAATTTGCAGACTGCATCCACTGGTGTTTACCAGGGGTTCCTGATGCTTGGAAT GAGATTCTCTACGCATATTTGTTACAGAATCATCAAAATTTTATGTGA
AA sequence Show only first row Show all	>Potri.001G376700.1 pacid=42790884 polypeptide=Potri.001G376700.1.p locus=Potri.001G376700 ID=Potri.001G376700.1.v4.1 annot-version=v4.1 MTIKPSLDRRIQTLFPVALACLLVLGTARLVLDSLKSNQSSIFRVYGRQEGGEYKKPVFVLPEDRFEKGCDVFEGQWVWDNVSRPLYTEESCPYLVKQTT CQRNGRPDSFYQDWRWQPHACKLPRFDPLKLLDVLRGKRLMFIGDSVQRGQFESMVCMVQSVIPDGKKSFHRIPPMKIFKAEEYNASIEYYWAPFIVESI SDHATNHTVLKRLVNLDSIAKHGKSWEGVDVLVFESYVWWMYKPLINATHGSTDDIQEYNVTTAYKLALETWAKWLESNINSIKQKVFFMSMSPTHLWSW EWRPGSDESCFNESYPIEGPYWGTGSNLQIMKIVDDILRESKINVTFLNITQLSEYRKDGHTTIYGERKGKLLTKEQRSDPKKFADCIHWCLPGVPDAWN EILYAYLLQNHQNFM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	0	1
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Potri.010G207200 [exp]	1.41	0.9708	UXS1.1
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.016G088700 [exp]	2.44	0.9640	Pt-FLA11.2
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Potri.013G155300 [exp]	4.47	0.9544
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	4.58	0.9569
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G127900 [exp]	5.19	0.9331	Pt-FLA14.6
AT3G44220			Late embryogenesis abundant (L...		Potri.009G019600 [exp]	5.47	0.9449
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.006G129200 [exp]	5.47	0.9532	Pt-FLA11.1
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	7.21	0.9331
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.004G118600 [exp]	7.93	0.9477
AT1G12000			Phosphofructokinase family pro...		Potri.011G015600 [exp]	11.48	0.9516

Compare expression of checked genes

Potri.001G376700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.