Plant FIBer expression Database

Potri.001G376800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17780 82 / 3e-17 unknown protein
AT2G16575 77 / 2e-16 unknown protein
AT2G31130 79 / 2e-15 unknown protein
AT1G73130 65 / 5e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G089900
[exp]
72 / 2e-13 AT2G31130 84 / 1e-17 unknown protein
Potri.013G118000
[exp]
65 / 3e-11 AT2G31130 85 / 8e-18 unknown protein
Potri.004G055300
[exp]
55 / 4e-08 AT2G31130 66 / 5e-12 unknown protein
Potri.011G065100
[exp]
50 / 2e-06 AT2G31130 63 / 8e-11 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033615
[exp]
79 / 8e-16 AT2G31130 101 / 2e-23 unknown protein
Lus10017672
[exp]
77 / 4e-15 AT2G31130 100 / 4e-23 unknown protein
Lus10000990
[exp]
67 / 7e-12 AT2G31130 70 / 3e-13 unknown protein
Lus10013926
[exp]
66 / 1e-11 AT2G31130 68 / 1e-12 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G376800.1 pacid=42791144 polypeptide=Potri.001G376800.1.p locus=Potri.001G376800 ID=Potri.001G376800.1.v4.1 annot-version=v4.1
ATGGATTTAAGATCTAAAGGTATGGCCTGGGCTGGAAACATTTACCAGAAGTTTGAAACTATGTGCCATGAAGTGGATAATGTTGTGAATAAGGATGCAT
TTAAATTCGTTGAAAATCAGGTGCACTCTGTGGGTGAGAACATGAAAAAAATCTATTCTGACGCTGTCCATGATTTAATCCCTCCTTTGGTGGATCCTGC
AAAATGTGAAGCTCCAGCAGCAGCTACCATTGGTGCCTATATTATTAAAACTGTGATTGGCATCGAGGATGATCATGAGTATGCTTCTCGGGCAAAGCAT
TCACCTGCGGAGCTTGGTGATCATGATCCTATGACAAAGCAACTAGGCAAGGACGTCTGGGAGCTTCAGGTTGCAAATCAATTGACTATCACTGGCAATT
CTGAAGAAACAATTGAAGGGGCAGAATCTGAGTCAGCTCTTGGAGTTGACGATGTTACAACTGAGACTTCTGATGTGAGCACTGAAGAAAATTCAGTAAA
GGAGAATTCCTGTGGACCTGAGGAGTTGGAATCTATTACTCATGGAGATAAAGAACCTTTTGAAGCATCCAGCGAATTTCCTGATTTTAGTAGTGAAAAT
GCATGTGGGTTTCTGGATAAGGTTTCACCTGTTACTTCAGTTCCTGGTGAGGCGTTCCAGTGCCCTCAAGATGTGGGAACTGTATGTGATAGCTCTGCAG
GTGACTCCTACTCTGCTAATGTGATTGTTTCTTCTTCTCAGATGTCCTTTTCAGTTGTATCTTCTGAAAAAGAAGCAGTGGAGATGGAAATTGTATCCCC
CAGCTGTTCCATATTCAAGGAATCTCATTGTTTGCCTGGGAACCCACTTGATAACATCACCACCAAATTAATCTCTTGCGGTAATCCTTTTGATGTGGCT
GGCCATGATTCTGACAGCTCCAAAATGCTTCTGTCTTCTACATCATCTCATTCTGATAGTTCTGTTGTGCTCTCGTCTTCTACATCTGCTCCAACTGTTT
CATGTAAGATCAATGGAGCAGAGATGGGGCTTGCCTCCTCCAACAGTGTGCTGTCTTTGGTATCAATAGGATGCTCGGATGACTCTGCTATAGAAGATTT
GACAGAATCTGAAATGGAAAACATTGATTTGTCTGAGAATGTGAAGCTTGATGAAAGTTGTGTCATTGTTGACAATAGCTTTCTCTATGAAGTCTCTCGT
AGAAATCGTAGACTCAGATCATACAAGAAAAAAATCCAAGATGCTTTCTCTTCCAAAAAGAGGTTAACCAAGGAGTATGAGCAGCTTGCAATTTGGTTCG
GGGACCTTGATGGCCATGATACAATGCAGCACGAGTTGTCATCTAGTACCACCATCACCTTGGATCCACAAACTAATTGGAGACAAGACTCTGAATGGGA
GCTTCTGTAA
AA sequence
>Potri.001G376800.1 pacid=42791144 polypeptide=Potri.001G376800.1.p locus=Potri.001G376800 ID=Potri.001G376800.1.v4.1 annot-version=v4.1
MDLRSKGMAWAGNIYQKFETMCHEVDNVVNKDAFKFVENQVHSVGENMKKIYSDAVHDLIPPLVDPAKCEAPAAATIGAYIIKTVIGIEDDHEYASRAKH
SPAELGDHDPMTKQLGKDVWELQVANQLTITGNSEETIEGAESESALGVDDVTTETSDVSTEENSVKENSCGPEELESITHGDKEPFEASSEFPDFSSEN
ACGFLDKVSPVTSVPGEAFQCPQDVGTVCDSSAGDSYSANVIVSSSQMSFSVVSSEKEAVEMEIVSPSCSIFKESHCLPGNPLDNITTKLISCGNPFDVA
GHDSDSSKMLLSSTSSHSDSSVVLSSSTSAPTVSCKINGAEMGLASSNSVLSLVSIGCSDDSAIEDLTESEMENIDLSENVKLDESCVIVDNSFLYEVSR
RNRRLRSYKKKIQDAFSSKKRLTKEYEQLAIWFGDLDGHDTMQHELSSSTTITLDPQTNWRQDSEWELL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17780 unknown protein Potri.001G376800
[exp]
0 1
AT3G07150 unknown protein Potri.002G244400
[exp]
3.46 0.8919
AT5G56290 EMB2790, PEX5, ... EMBRYO DEFECTIVE 2790, ARABIDO... Potri.001G473100
[exp]
3.74 0.8801 PEX5.2
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.010G029000
[exp]
4.89 0.8663
AT4G16420 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA... Potri.004G135400
[exp]
5.29 0.8565
AT5G46550 DNA-binding bromodomain-contai... Potri.001G355300
[exp]
6.92 0.8428
AT5G40250 RING/U-box superfamily protein... Potri.001G351466
[exp]
7.14 0.8343
AT1G35660 unknown protein Potri.019G083100
[exp]
7.34 0.8759
AT5G15570 Bromodomain transcription fact... Potri.004G116200
[exp]
8.12 0.8132
AT3G62800 DRB4 double-stranded-RNA-binding pr... Potri.019G037900
[exp]
8.48 0.8114
Potri.004G234200
[exp]
8.48 0.8527

Potri.001G376800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.