Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53460 255 / 3e-83 unknown protein AT1G48570 69 / 1e-12 zinc finger (Ran-binding) family protein (.1) AT1G70650 61 / 4e-10 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 59 / 2e-09 zinc finger (Ran-binding) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033000 [exp] 69 / 2e-12 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 67 / 4e-12 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 67 / 7e-12 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 67 / 9e-12 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.010G107400 [exp] 61 / 5e-10 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009049 [exp] 68 / 2e-12 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10032790 [exp] 60 / 1e-09 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10003580 [exp] 55 / 3e-08 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009681 [exp] 54 / 7e-08 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 47 / 2e-05 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 45 / 8e-05 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G376900.1 pacid=42789407 polypeptide=Potri.001G376900.1.p locus=Potri.001G376900 ID=Potri.001G376900.1.v4.1 annot-version=v4.1 ATGCATTTCGTCTTTAGAATTAGAACTCACCTCCTTAAACCCCAACAACGAAACCTCCTCTCTGTACTGGGTCCTTCAGTAATCATCCACAGAACCTTAA TCTCTTGCTCTACCAAACTCGATTCCGAATCCCAAATTAATGACCAAAACAAAAAACCCCTTCACCTCCTTTTCCAAGAAGCTGTAGGATTATGTGAAAA AACCGGAACAACAAGCCTTGGTACCCATAAAAAAACCAATGAGTTTAAGATAAAGTTGTTGGAGTTAGAGAGAGAAGTGAGGGATTTAAAAGAAGCAGAT TCGAAGAGGGGTGAAGAAGAGAAGGTAAAAAATGTGATGAGTAGAGCGAAAGAAGAGACACCCGGTAAGAATTTGTACTCTGTGTTTTTGGGAAAGAGTG AAAACAAAGTGGAAATGAAGGGAAAGGAAGAGAGCCCTGTGGTATTTAAGGCGGAAAGGAAGATGAAAGTGGGGAGGGAGGATAGGCCCAAGGTGTTTAA GGTGTTGTCTCCTGATATGGAAATGTTTATTACTCATTTGTATAAAGAAGGATACTTTAATAATGCCAGCTTCCTGAAAGATGTTAGCTTGGATTTTAGC TTCTTTCATGATAGTTATGGCAGGGATTTTATCAAGTATGCTGCAGAGAAGTTTGGTAAAGATCACCAAGAAATTGCAAAGTGGCTGTCAGGCAGTGATT TGAAAAAGGTGGCTCTCTTTGGTTGCCCTACCCTTATGAGAAAGAGTGTTTTTTCTGCCAAAAGATTGCGTAATTTTTTTGAGATTCAAGAGGCCACTGT ATGTAACAAATGCGTCTTAAAACATTCATGCAATTTCGTGAATCAAAGTGTATGGAGAGGTGATATCAAGACTCTGAATTTAGCTGTTGTGATGAGGGTC ATCACTTTATATGCGTTGGAGGCAGTGCACCCAGAATTGTCAGTGCCAAATGAGATTAAGGCTTCTGTCAACCGATTGTTGACTGAAATATTGAAGTTGA GTCAAACTGTTCGTCAAGCTGCATAG
AA sequence Show only first row Show all	>Potri.001G376900.1 pacid=42789407 polypeptide=Potri.001G376900.1.p locus=Potri.001G376900 ID=Potri.001G376900.1.v4.1 annot-version=v4.1 MHFVFRIRTHLLKPQQRNLLSVLGPSVIIHRTLISCSTKLDSESQINDQNKKPLHLLFQEAVGLCEKTGTTSLGTHKKTNEFKIKLLELEREVRDLKEAD SKRGEEEKVKNVMSRAKEETPGKNLYSVFLGKSENKVEMKGKEESPVVFKAERKMKVGREDRPKVFKVLSPDMEMFITHLYKEGYFNNASFLKDVSLDFS FFHDSYGRDFIKYAAEKFGKDHQEIAKWLSGSDLKKVALFGCPTLMRKSVFSAKRLRNFFEIQEATVCNKCVLKHSCNFVNQSVWRGDIKTLNLAVVMRV ITLYALEAVHPELSVPNEIKASVNRLLTEILKLSQTVRQAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53460			unknown protein		Potri.001G376900 [exp]	0	1
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.004G002900 [exp]	1.41	0.9138
AT1G31220			Formyl transferase (.1)		Potri.012G107500 [exp]	2.64	0.9226
AT1G32260			unknown protein		Potri.003G095600 [exp]	5.00	0.8893
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	6.63	0.8794
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Potri.011G165400 [exp]	10.58	0.8837
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	13.07	0.8816
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	14.00	0.8777
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.002G167400 [exp]	14.96	0.8621
AT4G20010		PTAC9, OSB2	ORGANELLAR SINGLE-STRANDED DNA...		Potri.001G394200 [exp]	15.09	0.8901
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	17.23	0.8640

Compare expression of checked genes

Potri.001G376900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.