Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14450 425 / 2e-150 CID9 CTC-interacting domain 9 (.1) AT1G53650 410 / 3e-145 CID8 CTC-interacting domain 8 (.1.2) AT3G49390 365 / 2e-126 CID10 CTC-interacting domain 10 (.1.2) AT1G32790 362 / 3e-125 CID11 CTC-interacting domain 11 (.1.2) AT4G10610 358 / 6e-124 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT5G24440 303 / 2e-102 CID13 CTC-interacting domain 13 (.1) AT1G45100 59 / 9e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71770 56 / 1e-08 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G34110 56 / 1e-08 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G18610 56 / 2e-08 ATNUC-L2, PARLL1, ATRANGAP1 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G095800 [exp] 524 / 0 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.015G005400 [exp] 372 / 5e-129 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 350 / 2e-120 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.011G152700 [exp] 338 / 2e-115 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.001G448800 [exp] 293 / 2e-98 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.010G209701 [exp] 64 / 2e-11 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.001G304000 [exp] 62 / 1e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 62 / 1e-10 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G062700 [exp] 61 / 5e-10 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008851 [exp] 385 / 6e-134 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 379 / 8e-132 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10033242 [exp] 369 / 6e-128 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 371 / 2e-127 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10032941 [exp] 350 / 7e-121 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10027886 [exp] 67 / 6e-12 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 66 / 7e-12 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 59 / 2e-09 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 59 / 3e-09 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010202 [exp] 57 / 9e-09 AT3G18610 218 / 9e-60 PARALLEL1-LIKE 1, nucleolin like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF07145 [poplar] [flax] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.001G377500.1 pacid=42792883 polypeptide=Potri.001G377500.1.p locus=Potri.001G377500 ID=Potri.001G377500.1.v4.1 annot-version=v4.1 ATGGCTGCGGTTGCTGAGATTACCAGTGAGGCTGCAGTGGCTTCCAACAACACCACCACCGCCGCCAACAAAAATGATAACAACAATAATTTGGACTCAG AAACAAAGCCAGCATCAGAATCTGAATTCACTGTCCAAAAGCTTGTGGATATGTTCACCAAGCTGAATCCCTTGGCTAAGGAGTTTTTCCCATCGTCTTA TAGTAAAAATAATCCAAACGAACTTCATTTCAACAATTTTGCAGTCCCTGTTAAGCAATCGGCCAATGACAACTTCCCTAAAAGGAAAAGAAATAACTTT AACCAGGGGAGGAGGAAGTTGAATGGGAGAGCTTATAGAGCCCAACAAGAAGACAGTATTAGACGAACAGTATATGTTTCTGACATTGATCAACATGTAA CTGAAGAGCGGCTTGCTGGCTTATTTAGTGGTTGTGGACAAGTTGTTGATTGCCGGGTTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCATTTGTGGA GTTTGCTGATGAGCAAGGAGCAAGAGCAGCTTTAAACCTCGGTGGGACAATGCTAGGATACTATCCAGTCAGAGTGCTACCTTCAAAAACTGCTATCCTT CCAGTGAATCCTACATTCCTCCCTAGGTCTGAAGATGAACGGGAGATGTGCACTAGGACAGTCTATTGTACCAACATCGATAAAAAGGTTTCTCAAGTTG AAGTCAAGAATTTCTTTGAATCAATATGTGGTGAGGTTACTCGCTTGAGACTTTTAGGGGATCAGGTGCATTCAACTCGTATAGCATTTGTTGAATTTGC TATGGCAGAAAGTGCCATCGTTGCACTGAATTGCAGTGGGATGGCCCTGGGATCCCAGCCTGTCAGGGTAAGTCCTTCAAAGACTCCCGTGAGGCCGCGA GTTACTCGCCCAGCAATGCATTAA
AA sequence Show only first row Show all	>Potri.001G377500.1 pacid=42792883 polypeptide=Potri.001G377500.1.p locus=Potri.001G377500 ID=Potri.001G377500.1.v4.1 annot-version=v4.1 MAAVAEITSEAAVASNNTTTAANKNDNNNNLDSETKPASESEFTVQKLVDMFTKLNPLAKEFFPSSYSKNNPNELHFNNFAVPVKQSANDNFPKRKRNNF NQGRRKLNGRAYRAQQEDSIRRTVYVSDIDQHVTEERLAGLFSGCGQVVDCRVCGDPHSVLRFAFVEFADEQGARAALNLGGTMLGYYPVRVLPSKTAIL PVNPTFLPRSEDEREMCTRTVYCTNIDKKVSQVEVKNFFESICGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMALGSQPVRVSPSKTPVRPR VTRPAMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14450		CID9	CTC-interacting domain 9 (.1)		Potri.001G377500 [exp]	0	1
AT4G21060			Galactosyltransferase family p...		Potri.016G013300 [exp]	4.47	0.8625
AT4G31080			Protein of unknown function (D...		Potri.006G281200 [exp]	4.89	0.8792
AT2G36670			Eukaryotic aspartyl protease f...		Potri.006G118800 [exp]	6.32	0.8579
AT1G28240			Protein of unknown function (D...		Potri.011G053000 [exp]	6.32	0.8750
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.003G173200 [exp]	6.70	0.8576	ASY1.1
AT5G13100			unknown protein		Potri.001G059700 [exp]	8.24	0.8342
AT5G58100			unknown protein		Potri.006G080700 [exp]	9.00	0.8376
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.019G048800 [exp]	10.81	0.8733
AT1G51540			Galactose oxidase/kelch repeat...		Potri.008G006200 [exp]	14.49	0.8535
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.017G134900 [exp]	16.61	0.8524	TMK1.1

Compare expression of checked genes

Potri.001G377500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.