Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78400 295 / 6e-97 Pectin lyase-like superfamily protein (.1) AT2G15450 286 / 3e-93 Pectin lyase-like superfamily protein (.1) AT1G43080 285 / 3e-93 Pectin lyase-like superfamily protein (.1) AT1G17150 285 / 5e-93 Pectin lyase-like superfamily protein (.1) AT2G15470 283 / 3e-92 Pectin lyase-like superfamily protein (.1) AT2G15460 282 / 4e-92 Pectin lyase-like superfamily protein (.1) AT2G33160 290 / 5e-92 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) AT1G43090 282 / 2e-91 Pectin lyase-like superfamily protein (.1) AT2G40310 277 / 6e-90 Pectin lyase-like superfamily protein (.1) AT1G43100 278 / 1e-89 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G038100 [exp] 380 / 1e-130 AT1G78400 357 / 4e-121 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 254 / 8e-81 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 235 / 6e-74 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 235 / 6e-74 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 235 / 6e-74 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 234 / 2e-73 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 231 / 3e-72 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 231 / 3e-72 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067166 [exp] 231 / 3e-72 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026183 [exp] 306 / 4e-101 AT2G33160 305 / 2e-100 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) Lus10042483 [exp] 300 / 8e-99 AT2G33160 298 / 6e-98 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1) Lus10026184 [exp] 296 / 2e-97 AT1G78400 310 / 6e-103 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 235 / 2e-70 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10016824 [exp] 209 / 3e-63 AT4G18180 281 / 7e-91 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 206 / 3e-62 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 206 / 5e-62 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 204 / 6e-62 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 204 / 9e-62 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 202 / 6e-61 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.001G377700.1 pacid=42792824 polypeptide=Potri.001G377700.1.p locus=Potri.001G377700 ID=Potri.001G377700.1.v4.1 annot-version=v4.1 ATGGGTTTGATTTTGGCTTTTGTTAGGGTTTTGTTTCTTACGTTCCTTTTGGTCTGGTATACTGATGCTGGAGCTAGCAATGGCTACAAGGTTTTCAATG TGAAGAGATACGGTGCAGTCTCCGATGGCAAGACAGAGAATAACAAGGCGTTCTTGAAAGCATGGAGTGAGGCATGTCAATGGCATGGAAAGGCTATGGT TTTGATCCCAAGAGGAGTATACATTTTGGACTCGGTGCTATTTTTAGGTGAATGCAATGGTTACATGGCATTTAACTTGAAGGGGATTTTAAAGCCAAAA GGCATTCTGCAGACTTCTGATCAGTGGATTACTTTCCGGTATATTAAAGGGTTCTTTCTCGGAGGCGGTGGTACCTTGGATGGGGAAGGATACAAGCATT GGAACCGCCATGATTGTCTCAAAAACCATAACTGCCATCCTCTTGCCATTTCATTGAGACTCGAATTTATCCAAAATGGGATGGTCAGCCATATAAGATC AATCAACAGCCAGAACGCCCACATGTCACTCTTTGGGTGCGTCAACTTAAACATGTCTAATCTTAGACTATCAGCTCCAGGTGATAGCCCTAACACTGAT GGGATCAAAATTGGGAGTTCAGAAGAGATTAAGATTTCCAAAACAAGAATTGGCACCGGCGATGATTGTGTAGCTATACTCTCTGGAAGTAAGAACATTA ATATTTCTCAAGTCCATTGTGGCCCTGGGCATGGAATTAGTGTTGGAAGTATGGGAGGGGAGGGTAGTGTGACAGAGAGTGTGGTGGGAGTAACTGTGAA GGATTGCACCTTTAACGGTACAAGTGATGGTACAAGAATCAAAACATGGGCTTCCTCCACTGCCGGTGTTGCTTCCAATTTCATATATGAGAACATTCGA ATGATGAATGTTGGCAATCCTATCATTATCGATCAAGATTATTGCCCTTACCCTCCCTGTGGTATGAAGACTCCCTCACGCATTCAAATCAAAGACATTA CATTCAACAACATTTGGGGCACTTCTGAATCGAATGTTGCAGTTACTTTAAATTGTAGTCGAACCGTTCCATGCAAGAATATACTGCTAAAAGACATCAG TTTTTTCCACGGTCGTGGAGGTTCTGTAAGGTCGTTATGTTCCAACGCCAGGGGTACTTCTTATGGCCGTCAAACACCACCCTCTTGCTTCTAG
AA sequence Show only first row Show all	>Potri.001G377700.1 pacid=42792824 polypeptide=Potri.001G377700.1.p locus=Potri.001G377700 ID=Potri.001G377700.1.v4.1 annot-version=v4.1 MGLILAFVRVLFLTFLLVWYTDAGASNGYKVFNVKRYGAVSDGKTENNKAFLKAWSEACQWHGKAMVLIPRGVYILDSVLFLGECNGYMAFNLKGILKPK GILQTSDQWITFRYIKGFFLGGGGTLDGEGYKHWNRHDCLKNHNCHPLAISLRLEFIQNGMVSHIRSINSQNAHMSLFGCVNLNMSNLRLSAPGDSPNTD GIKIGSSEEIKISKTRIGTGDDCVAILSGSKNINISQVHCGPGHGISVGSMGGEGSVTESVVGVTVKDCTFNGTSDGTRIKTWASSTAGVASNFIYENIR MMNVGNPIIIDQDYCPYPPCGMKTPSRIQIKDITFNNIWGTSESNVAVTLNCSRTVPCKNILLKDISFFHGRGGSVRSLCSNARGTSYGRQTPPSCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78400			Pectin lyase-like superfamily ...		Potri.001G377700 [exp]	0	1
					Potri.003G026712 [exp]	3.74	0.9538
AT3G19080			SWIB complex BAF60b domain-con...		Potri.007G039350 [exp]	27.71	0.9219
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.001G338800 [exp]	39.39	0.9523
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.001G261104 [exp]	42.00	0.9180
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Potri.001G058400 [exp]	43.70	0.9230
					Potri.001G276804 [exp]	47.02	0.9438
					Potri.001G330250 [exp]	49.11	0.9438
					Potri.001G466250 [exp]	58.45	0.9438
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	64.96	0.9438
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Potri.004G160200 [exp]	66.49	0.9438

Compare expression of checked genes

Potri.001G377700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.