Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78430 238 / 5e-76 RIP2 ROP interactive partner 2 (.1) AT1G17140 215 / 7e-67 RIP1, ICR1 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005576 [exp] 210 / 6e-65 AT1G17140 238 / 4e-76 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) Lus10013708 [exp] 202 / 6e-62 AT1G17140 229 / 8e-73 ROP INTERACTIVE PARTNER 1, interactor of constitutive active rops 1 (.1.2) Lus10026482 [exp] 42 / 0.0006 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G377900.3 pacid=42793048 polypeptide=Potri.001G377900.3.p locus=Potri.001G377900 ID=Potri.001G377900.3.v4.1 annot-version=v4.1 ATGCCGAGATCAAGAGGATCAGAAATGCCTCAAAGGCAGTCTCCTCGAGGCTCACATCCACTTAGGACATCTAACTCTGATTCCGACCCACTGCATCATA GACCTATAACTGATCGAAGAGAAAAGCTAGGAGACCGTTGCTCCCCAAGAGGCTCCCAGCCTGACTCATTAAACCAAAAGAAGCTTGGAACCCGCATTGC AGATTTAGAATCTCAGCTTGGCCAAGCACAAGTAGAGCTGAAGACTCTAAAAGAGCAGTTGGCTTCAGCTGAAGCTGCAAAGAAAGAAGCTCAAAAAGAA TTGGAGAAAAAAGCCAGGAAAGGTGCTGTTCCAGAGCCAGAGGTGGATTCCAAAAAAGCAGATAGCAACTCAGCAGATGAAGTTTCTGAAGACAACCAGC TGGAAACTGATGTTTTTGAAGTTCCAGTGGAGAAAAAGACTGTTGAGCCCAAGGATGATCCTGGCGACCTGCTTGATCAGGTAGAAAAAGAAAACAACCC AACTGATATACCGGCTGAACCGCTAGTGATTTCAGAGCCAGAAAAGCTGTCTTTTCATGACCTGGCATTGAAGGATGATGAGATAAATATGCTAAAAACC AAGCTAGAAGAGAAACAAAAGGACCTAGAGGTGTTTGGTATGGAAAATGAGAACTTGAAGAATCAACTGAATGAAGCAAATTTGTACATCTCATCTGCCA AATCCAAGGAAGAGGAAGTGTCCTTGAAGCTGGGCCAATTGGGAGAAGAGCTGGAAGCAAGTAAAGCAAATGCTGCCCAGTTAAAGGGGAAACTGGAAGC TGCCGAAGGAGCGAACGAAGCATTGGAGACAGAAATGAAGAAAATGAGAGTGCAGACAGAGCAGTGGAGAAAAGCAGCAGATGCTGCTGCTGCAGTACTC GCTGGGGGAGTGGAGATGAGTGGAAGGATTCCAGAGAGGTGTGGCTCCATGGATAAGCACTTTGGTGGTGTATTCGAGCCACCAGCAGGAGGGTATGCTG GTTTTGTCGGATCACCTGGAATGGCTGATGATTTGGACGATGGTTTTGGTAGCGTGAAGCGAAAGAGCTCTGGGATCAAGAAGTTTGGAGACTTGTGGAA AAAGAAGGGCCAGAAATAA
AA sequence Show only first row Show all	>Potri.001G377900.3 pacid=42793048 polypeptide=Potri.001G377900.3.p locus=Potri.001G377900 ID=Potri.001G377900.3.v4.1 annot-version=v4.1 MPRSRGSEMPQRQSPRGSHPLRTSNSDSDPLHHRPITDRREKLGDRCSPRGSQPDSLNQKKLGTRIADLESQLGQAQVELKTLKEQLASAEAAKKEAQKE LEKKARKGAVPEPEVDSKKADSNSADEVSEDNQLETDVFEVPVEKKTVEPKDDPGDLLDQVEKENNPTDIPAEPLVISEPEKLSFHDLALKDDEINMLKT KLEEKQKDLEVFGMENENLKNQLNEANLYISSAKSKEEEVSLKLGQLGEELEASKANAAQLKGKLEAAEGANEALETEMKKMRVQTEQWRKAADAAAAVL AGGVEMSGRIPERCGSMDKHFGGVFEPPAGGYAGFVGSPGMADDLDDGFGSVKRKSSGIKKFGDLWKKKGQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78430		RIP2	ROP interactive partner 2 (.1)		Potri.001G377900 [exp]	0	1
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	2.82	0.9148
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	3.16	0.9102
AT2G01818			PLATZ transcription factor fam...		Potri.008G137300 [exp]	5.19	0.8960
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	6.92	0.9063
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	7.34	0.9064
AT2G24290			Protein of unknown function (D...		Potri.013G026900 [exp]	7.48	0.9007
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.003G044900 [exp]	8.48	0.8981	STI.5
AT4G34980		SLP2	subtilisin-like serine proteas...		Potri.009G133400 [exp]	8.66	0.8757
AT3G53320			unknown protein		Potri.006G131650 [exp]	10.24	0.9026
AT2G33640			DHHC-type zinc finger family p...		Potri.005G254432 [exp]	11.31	0.8703

Compare expression of checked genes

Potri.001G377900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.