Plant FIBer expression Database

Potri.001G378000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78420 387 / 8e-133 RING/U-box superfamily protein (.1.2)
AT1G17145 336 / 1e-113 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G096000
[exp]
669 / 0 AT1G78420 376 / 3e-128 RING/U-box superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005577
[exp]
546 / 0 AT1G78420 393 / 6e-135 RING/U-box superfamily protein (.1.2)
Lus10013709
[exp]
450 / 3e-158 AT1G78420 381 / 1e-131 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G378000.2 pacid=42793737 polypeptide=Potri.001G378000.2.p locus=Potri.001G378000 ID=Potri.001G378000.2.v4.1 annot-version=v4.1
ATGGGGAATAAGCTGGGGAGAAGGAGACAAGTGGTGGATGAGAGGTATACAAGACCACAAGGTCTCTATGTTCATAAAGATGTGGACCATAAAAAGCTGA
GAAAGCTCATTCTCGAATCCAAGCTTGCCCCTTGTTTTCCAGGGGATGAAGACAGCTGTAATGATCATGAGGAATGCCCAATCTGTTTCTTGTATTATCC
GAGTCTCAACCGATCAAGATGTTGCATGAAGGGCATTTGTACAGAGTGTTTTCTGCAGATGAAGAATCCTAATTCAACTCGTCCTACCCAATGTCCATTT
TGCAAAACCTCAAATTATGCTGTGGAGTATCGAGGTGTGAAAACAAAGGAGGAAAAGGGTTTGGAGCAGATTGAAGAACAGCGTGTTATAGAAGCGAAAA
TTAGGATGCGACAGCAGGAGCTTCAGGATGAAGAAGAGAGAATGCAGAAAAGACTAGATGTGAGTTCGTCAAGTGCTAATATTGAACCAGGGGAGCTTGA
ATGTGGGCCAACAACTGTTCCATCCGATACGACTCCTGTGGAAAGTGGGGAAATCGTTTCGTCTCAATACTCAAGCAGACGTCCTCCGCACGCTGGAGCG
AACAGGGATGATGAATTTGACCTGGATCTCGAGGATATTATGGTTATGGAAGCAATCTGGCTTTCCATTCAGGAAAATGGAAGACAGAAAAATCCACTTT
GTGGTGATGCTGCACCACCTGCACAATATACCATGGAAGCACGCTATGTGACTCCAGCGATGGCACCACCACTGGCTGGATCTTCATCATCCCCTTCTGG
AGGTCTTGCTTGTGCTATAGCTGCTCTCGCTGAGCGTCAGCAGACTGGTGGGGAATCAATTGTTCACAATAGTGGAAATATGCCATCATTCAACATGCTT
CCAAGCACTAGTAGCTTTTACAACAGGCTTGAGCAGGATGCAGACAATTACTCGCCTGCACAGAGCTCTAGCAATGTATTGCCAGACTGCAGGATGATTG
TGACAAGAGATGATGGGGAATGGGGTGCAGATCGTGGATCAGATGCTGCTGAAGCTGGGACCAGTTATGCAAGTTCTGAGACTGCAGAAGATGCTGGTGG
AATTTCTTCCCTGTTACCTCCACCACCACCTACAGATGAAATTGGAGGAAGCTTTCAGAATGTCTCTGGACCCATCCCAGAGAGTTTTGAGGAGCAGATG
ATGCTGGCCATGGCTGTTTCCCTTGCTGAGGCTCGAGCTATGACTAGTGGGCCCCAAAGTGCATGGCAATAG
AA sequence
>Potri.001G378000.2 pacid=42793737 polypeptide=Potri.001G378000.2.p locus=Potri.001G378000 ID=Potri.001G378000.2.v4.1 annot-version=v4.1
MGNKLGRRRQVVDERYTRPQGLYVHKDVDHKKLRKLILESKLAPCFPGDEDSCNDHEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNSTRPTQCPF
CKTSNYAVEYRGVKTKEEKGLEQIEEQRVIEAKIRMRQQELQDEEERMQKRLDVSSSSANIEPGELECGPTTVPSDTTPVESGEIVSSQYSSRRPPHAGA
NRDDEFDLDLEDIMVMEAIWLSIQENGRQKNPLCGDAAPPAQYTMEARYVTPAMAPPLAGSSSSPSGGLACAIAALAERQQTGGESIVHNSGNMPSFNML
PSTSSFYNRLEQDADNYSPAQSSSNVLPDCRMIVTRDDGEWGADRGSDAAEAGTSYASSETAEDAGGISSLLPPPPPTDEIGGSFQNVSGPIPESFEEQM
MLAMAVSLAEARAMTSGPQSAWQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78420 RING/U-box superfamily protein... Potri.001G378000
[exp]
0 1
AT3G09850 D111/G-patch domain-containing... Potri.018G113600
[exp]
6.00 0.8112
AT4G23010 ATUTR2, UTR2 UDP-galactose transporter 2 (.... Potri.001G111000
[exp]
8.94 0.8251
AT5G60570 Galactose oxidase/kelch repeat... Potri.019G042100
[exp]
9.64 0.8058
AT4G11740 SAY1 Ubiquitin-like superfamily pro... Potri.003G122300
[exp]
9.89 0.7703
AT2G21270 UFD1 ubiquitin fusion degradation 1... Potri.009G124900
[exp]
10.48 0.7845
AT2G38610 RNA-binding KH domain-containi... Potri.019G132100
[exp]
10.48 0.8006
AT4G32600 RING/U-box superfamily protein... Potri.006G247000
[exp]
13.26 0.7655
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.004G062500
[exp]
21.00 0.7890
AT3G12400 ELC, ATELC Ubiquitin-conjugating enzyme/R... Potri.003G191100
[exp]
22.09 0.8012
AT5G01990 Auxin efflux carrier family pr... Potri.016G141700
[exp]
27.12 0.7490

Potri.001G378000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.