Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA2ox1,GA2.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78440 404 / 9e-142 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT1G30040 389 / 1e-135 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 358 / 1e-123 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G02400 299 / 2e-100 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 296 / 1e-99 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G78550 170 / 7e-50 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 167 / 1e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G15550 165 / 6e-48 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT5G08640 160 / 2e-46 ATFLS1, FLS flavonol synthase 1 (.1.2) AT1G17020 159 / 8e-46 ATSRG1, SRG1 senescence-related gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G095600 [exp] 629 / 0 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 484 / 2e-173 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.014G117300 [exp] 356 / 7e-123 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 346 / 5e-119 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.002G191900 [exp] 341 / 5e-117 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.010G149700 [exp] 330 / 1e-112 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.015G002800 [exp] 169 / 1e-49 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 160 / 2e-46 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G132400 [exp] 161 / 3e-46 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023311 [exp] 393 / 1e-137 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10025016 [exp] 337 / 2e-115 AT1G02400 367 / 4e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10009998 [exp] 328 / 8e-112 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 321 / 4e-109 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 267 / 4e-88 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 265 / 9e-88 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10038498 [exp] 251 / 2e-83 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10011476 [exp] 174 / 4e-51 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10021002 [exp] 163 / 2e-47 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011979 [exp] 159 / 7e-46 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G378400.1 pacid=42793295 polypeptide=Potri.001G378400.1.p locus=Potri.001G378400 ID=Potri.001G378400.1.v4.1 annot-version=v4.1 ATGGTGCTTATATCCAAGCCAGCTCTTGAACAGTTCTCGTTTATAAGAAACAGAAAACCTACCACAGTTTTTTCTGGAATCCCTCTAATAGACCTCTCAA AACCTGACTCCAAGCACCTACTGGTTGAGGCATGCGAGGAATTTGGATTTTTCAAGGTAATCAACCATGGAGTGCCTATGGAATTCATATCCAAGCTGGA ATCTGAAGCTGTCAATTTCTTCTCATTACCGCTCTCTGAGAAAGAAAAAGTAGGCCCTCCTAGCCCCTTTGGCTATGGTAACAAAAGCATTGGACAAAAT GGTGATGTGGGCTGGGTAGAATACCTTCTCTTAACCACTAATCAAGAATCAATTTCTCAGAGGTTCTCTTCAGTTTTTGGTGACAACCCAGAAAAGTTTC GGTGTGCTTTAAATGATTATGTATCAGCTGTGAAGAAAATGGCATGTGAGATTCTTGAAATGATGGCTGATGGTCTAAAACTTCAACAAAGAAATGTGTT TAGTAAACTTTTGATGGATGAACAGAGTGACTCTGTTTTTAGGCTAAATCACTACCCTCCATGCCCAGAAATTGAAGCATTGACTGACCAAAACATGATT GGATTTGGAGAGCATACAGACCCACAAATCATTTCTGTGTTAAGATCCAACAACACTTCTGGCCTGCAAATCTCTCTCAGTGATGGCAGCTGGATTTCAG TTCCACCTGATCAGAACTCATTTTTTGTCAATGTTGGTGACTCATTACAGGTTATGACTAATGGGAGGTTTAAGAGTGTCAGGCACAGGGTTTTGACCAA CAGCATGAAAGCTAGAGTTTCAATGATTTATTTTGGTGGACCACCTTTGAGTGAGAAAATAGCTCCATTGCCCTCGCTCATAAAAGGAAAGGAAAGCTTG TACAAAGAATTTACATGGTTCGAGTACAAAAGATCTGCCTACAGCTCCAGATTGGCTGATAATAGGCTTGTCCTCTTTGAGAGAATAGCAGCCTCGTAA
AA sequence Show only first row Show all	>Potri.001G378400.1 pacid=42793295 polypeptide=Potri.001G378400.1.p locus=Potri.001G378400 ID=Potri.001G378400.1.v4.1 annot-version=v4.1 MVLISKPALEQFSFIRNRKPTTVFSGIPLIDLSKPDSKHLLVEACEEFGFFKVINHGVPMEFISKLESEAVNFFSLPLSEKEKVGPPSPFGYGNKSIGQN GDVGWVEYLLLTTNQESISQRFSSVFGDNPEKFRCALNDYVSAVKKMACEILEMMADGLKLQQRNVFSKLLMDEQSDSVFRLNHYPPCPEIEALTDQNMI GFGEHTDPQIISVLRSNNTSGLQISLSDGSWISVPPDQNSFFVNVGDSLQVMTNGRFKSVRHRVLTNSMKARVSMIYFGGPPLSEKIAPLPSLIKGKESL YKEFTWFEYKRSAYSSRLADNRLVLFERIAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.001G378400 [exp]	0	1	GA2ox1,GA2.7
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	4.58	0.8552
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	8.12	0.8445
AT4G30790			unknown protein		Potri.018G103000 [exp]	8.36	0.8514
AT5G16120			alpha/beta-Hydrolases superfam...		Potri.017G114800 [exp]	12.64	0.8148
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	24.18	0.8129
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Potri.010G041800 [exp]	30.72	0.8275
AT5G50080	AP2_ERF	ERF110	ethylene response factor 110 ...		Potri.002G065600 [exp]	30.82	0.8229
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355200 [exp]	34.11	0.8227
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.004G179300 [exp]	37.30	0.8152	Pt-ZOG1.14
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G087000 [exp]	38.24	0.8181

Compare expression of checked genes

Potri.001G378400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.