Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) AT1G78450 204 / 2e-66 SOUL heme-binding family protein (.1) AT1G78460 164 / 7e-51 SOUL heme-binding family protein (.1) AT3G10130 52 / 1e-07 SOUL heme-binding family protein (.1) AT5G20140 49 / 9e-07 SOUL heme-binding family protein (.1.2) AT2G37970 44 / 3e-05 SOUL-1 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080000 [exp] 146 / 1e-43 AT1G17100 153 / 2e-46 SOUL heme-binding family protein (.1) Potri.012G088400 [exp] 144 / 5e-43 AT1G17100 155 / 3e-47 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 137 / 7e-40 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 114 / 3e-31 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1) Potri.016G098500 [exp] 62 / 2e-11 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 57 / 8e-10 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.018G073501 [exp] 50 / 6e-07 AT5G20140 528 / 0.0 SOUL heme-binding family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041532 [exp] 277 / 8e-95 AT1G17100 293 / 3e-101 SOUL heme-binding family protein (.1) Lus10012559 [exp] 278 / 3e-94 AT1G17100 292 / 1e-99 SOUL heme-binding family protein (.1) Lus10001247 [exp] 142 / 6e-42 AT1G17100 142 / 3e-42 SOUL heme-binding family protein (.1) Lus10042093 [exp] 140 / 3e-41 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1) Lus10013045 [exp] 104 / 2e-27 AT1G17100 124 / 5e-35 SOUL heme-binding family protein (.1) Lus10029117 [exp] 86 / 2e-20 AT1G17100 99 / 3e-25 SOUL heme-binding family protein (.1) Lus10022712 [exp] 59 / 4e-10 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10014203 [exp] 54 / 2e-08 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10017193 [exp] 47 / 2e-06 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF04832 [poplar] [flax] SOUL SOUL heme-binding protein
Representative CDS sequence Show only first row Show all	>Potri.001G379000.1 pacid=42792982 polypeptide=Potri.001G379000.1.p locus=Potri.001G379000 ID=Potri.001G379000.1.v4.1 annot-version=v4.1 ATGTTGAAGCTATCATTTCTCTTGACCCTTCTCTCAAGTGCAAGCTTTGGCCCCTGGCATGATGAGGCTAAGAGGAGCGGCGTTGCGATATACCCACCTG CTTGCACCAGCATAGAATGCCCAGTGTTTGATGTTCTTCAACTTGGCAATGGCTACGAAATTCGTCGCTATAACTCTTCTGTTTGGATGTCCACCTCTTC TATCCAAGATATCTCCCTTGTTGATGCCACCAGAACTGGATTCTTAAGGCTATTTGACTACATCCAAGGGAAGAATAGCTATGAAGAAAAAATAGAGATG ACAGCTCCGGTGATCACTGAAGTATCACCCAGTGATGGACCGTTCTGTGAATCCTCATTCACTGTCAGTTTCTATGTCCCAAAAGAGAACCAAGCTAATC CACCTCCAGCGAAAGGCCTCCATGTTCAGAGATGGAAACCGACATATGTAGCTGTAAGGCAATTCAATGGATTTGTCACTGACTCAAATGTTGGAGAGGA AGCTGCTGCCTTGCAAGCTAGTCTTGCTGACACCATTTGGGCTGCTGCCATTGAGAAAAGCCGTCCTGATTCCACTACCGTCTATACTGTTGCACAGTAC AACTCTCCATTTGAGTTTGACAACAGGGTGAATGAGATATGGATGCAATTTTACGTAGAAGATGAGCTGCTGGTAATGTAA
AA sequence Show only first row Show all	>Potri.001G379000.1 pacid=42792982 polypeptide=Potri.001G379000.1.p locus=Potri.001G379000 ID=Potri.001G379000.1.v4.1 annot-version=v4.1 MLKLSFLLTLLSSASFGPWHDEAKRSGVAIYPPACTSIECPVFDVLQLGNGYEIRRYNSSVWMSTSSIQDISLVDATRTGFLRLFDYIQGKNSYEEKIEM TAPVITEVSPSDGPFCESSFTVSFYVPKENQANPPPAKGLHVQRWKPTYVAVRQFNGFVTDSNVGEEAAALQASLADTIWAAAIEKSRPDSTTVYTVAQY NSPFEFDNRVNEIWMQFYVEDELLVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17100			SOUL heme-binding family prote...		Potri.001G379000 [exp]	0	1
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.006G040800 [exp]	3.00	0.9454
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.009G140500 [exp]	4.69	0.9594	Pt-CAO.3
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Potri.001G091300 [exp]	5.47	0.9392
AT3G15190			chloroplast 30S ribosomal prot...		Potri.001G396600 [exp]	10.77	0.9536
AT5G41761			unknown protein		Potri.003G136700 [exp]	15.19	0.9292
AT3G54210			Ribosomal protein L17 family p...		Potri.016G143100 [exp]	20.39	0.9418
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.002G006100 [exp]	22.71	0.9383
AT1G16080			unknown protein		Potri.003G185501 [exp]	30.14	0.9326
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.001G118400 [exp]	32.12	0.8756
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Potri.017G125100 [exp]	32.61	0.9113

Compare expression of checked genes

Potri.001G379000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.