Plant FIBer expression Database

Potri.001G379400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G379300
[exp]
73 / 2e-16 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G379400.2 pacid=42790245 polypeptide=Potri.001G379400.2.p locus=Potri.001G379400 ID=Potri.001G379400.2.v4.1 annot-version=v4.1
ATGGCATCTCTGCTACCTGAAAATATAAGCATCAAAACTGGTGACGATGACTTCAAAGGAATTGAAGGGTATGATGATAATGCCCTTCTCATGTCTTTGC
TAGAAGAGTCACAAGGAGATCATGAGAGCAATGAAGAAAGATTAAGGAGCGTGATCCAATCTCTCGAAGCAGAGATCAACCCAAGTATAATGTCGGACGG
CTATGATACAGCCATGGATCCAGCTGAGATGCCTCGTGACGGAGAGGATACTGATGAATTGTTCAAGACGGCAGAAATGGAGTCACTTGGTCTTGACTTC
GAACTGGTAGATATGGAGGTGGTGCCTTCTTCGCCAAGCGATCATGACATGAATTATTGGTACAATATGGAACCTTCAGAGAATGATATCGTTGAGTTTG
GTGTTAGGAACTATTTTCAATTTGGTCATGAAGCCGCCTTGGAGGAGCATGGCTATAGCTCGTTGTGGCAAGAATCATATGACATAATGATGTACAATTA
A
AA sequence
>Potri.001G379400.2 pacid=42790245 polypeptide=Potri.001G379400.2.p locus=Potri.001G379400 ID=Potri.001G379400.2.v4.1 annot-version=v4.1
MASLLPENISIKTGDDDFKGIEGYDDNALLMSLLEESQGDHESNEERLRSVIQSLEAEINPSIMSDGYDTAMDPAEMPRDGEDTDELFKTAEMESLGLDF
ELVDMEVVPSSPSDHDMNYWYNMEPSENDIVEFGVRNYFQFGHEAALEEHGYSSLWQESYDIMMYN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G379400
[exp]
0 1
AT1G43650 nodulin MtN21 /EamA-like trans... Potri.002G068300
[exp]
4.47 0.9114
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Potri.016G057600
[exp]
4.47 0.8786
Potri.012G054000
[exp]
4.79 0.9158
AT4G36810 GGPS1 geranylgeranyl pyrophosphate s... Potri.017G124700
[exp]
5.19 0.8948 Pt-HBGGPPS2.3
Potri.001G141701
[exp]
8.24 0.8789
AT1G49470 Family of unknown function (DU... Potri.009G108900
[exp]
14.83 0.8304
AT3G09390 ATMT-K, ATMT-1,... ARABIDOPSIS THALIANA METALLOTH... Potri.009G030800
[exp]
15.96 0.8437
AT1G76990 ACR3 ACT domain repeat 3 (.1.2.3.4.... Potri.002G074800
[exp]
16.24 0.7956 Pt-ACR3.1
AT2G32010 CVL1 CVP2 like 1 (.1.2) Potri.010G084300
[exp]
17.34 0.7957
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Potri.016G057400
[exp]
17.83 0.8645

Potri.001G379400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.