Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14580 443 / 6e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 169 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 150 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01400 146 / 4e-39 unknown protein AT4G20090 148 / 6e-39 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 144 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 146 / 3e-38 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 140 / 2e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G18475 139 / 2e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 138 / 3e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057900 [exp] 163 / 2e-45 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 164 / 2e-44 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 159 / 8e-43 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 154 / 5e-41 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 152 / 3e-40 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G103600 [exp] 147 / 2e-39 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 141 / 3e-37 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 140 / 4e-36 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G105900 [exp] 136 / 2e-35 AT4G01400 576 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042476 [exp] 473 / 3e-166 AT3G14580 400 / 7e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026191 [exp] 470 / 2e-165 AT3G14580 391 / 2e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 173 / 5e-49 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 160 / 3e-43 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 155 / 3e-41 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013972 [exp] 144 / 1e-38 AT5G46100 520 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002675 [exp] 145 / 4e-38 AT4G01400 570 / 0.0 unknown protein Lus10038974 [exp] 146 / 5e-38 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 136 / 1e-35 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 138 / 3e-35 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G379500.1 pacid=42791820 polypeptide=Potri.001G379500.1.p locus=Potri.001G379500 ID=Potri.001G379500.1.v4.1 annot-version=v4.1 ATGATTTCACGACCGTTTCCTGCACAAAAATCAGTCTTTAAATATGTTTTAGCTCATTCAAGAACCACCTTTCCAAACCCAATTCCTAAAATCCTTCCTT GTTCACTCTCTACAGCATTTCCTTCTTCTTCTTCTTCAATATCATCACAAAACTCTGATTCCACATACAAATTGACCCACAAAGACTGGTTATCTCCAAA TGAAGTCATAAAGATCTTTGAAAATCTTAAAGACCCAAATTCAATAATCTCAGTATGGAACCAATACTCAAAGAGGAAAGACTATAAACCCAATGAAGCC CTTTACAATCAGGTCATAAACAAGCTTGCACAAGCCAAAAACTTTGATGCGATTGAAGATATAATGCAAAAAATCAAACTTGACAAGTCATGTCGTTTAT CAAACGATTTCTTTCACAATGTGATCAAGATTTATGGCCAATTAGCGGGTCGAATCAAGAAAGCAATGGAGACCCTTTTTGATATGCCAAAAGGGTATAA CTGTTGGCCTAATGTGAAAAGTTTCAATCTTGTATTGAACTTGCTTGTATCTGCAAAAGTTTTTGATGTAGTTCATGAGGTGTATTTGCAAGCTCCTATG TTGGGTATAGAGATTGATGTTTGTTCTCTTAATATTCTCATTAAGGGGTTATGTGAGAATGGGGATTTGGAGGCTGCATTCAATGTGCTTGATGAATTTC CTAAACAAAGGTGTGAGCCCAATGTGAGAACGTTTTCGACTCTAATGCATGGGTTGTGCAAGAAAGGGAAGGTGGAGGAGGCATTTGGTTTGCTGGAGAG GATGGAAAAGGAGGGTATTGATGCGGATACGATCACTTTCAATATCTTGATTTCTGGGCTAAGAAAGCAGGGCAAAGTTGTGGAGGGGCTGGAGTTGTTG GAGAGAATGAATATTAAAGGGTGTGAACCAAATGCTGGGTCTTATCAAGAGATATTGTATGGTTTGCTTGATGCAGAGAAGTACGTTGAGGGAAAAGAAT TTATGGTTAGGATGATTGGGCAGGGAGTTGATCCTAGTTTTGTGTCCTACAAGAAGTTGGTTCATGGACTTTGCAAGGAAAGGTTGCTAAGGGATTTGGA TTGGGTTTTGAAGCAAATGGCAAGGCAAGGTTTTGTTCCCAAGATGGGAATGTGGGTGCAGATGGTTCAAAGTGTGGTTTCCGTCCGTTATAGTTTCAAC CATGTTTCTCTAAGTGAAATTGTTAATTGTGAGAATATTTGA
AA sequence Show only first row Show all	>Potri.001G379500.1 pacid=42791820 polypeptide=Potri.001G379500.1.p locus=Potri.001G379500 ID=Potri.001G379500.1.v4.1 annot-version=v4.1 MISRPFPAQKSVFKYVLAHSRTTFPNPIPKILPCSLSTAFPSSSSSISSQNSDSTYKLTHKDWLSPNEVIKIFENLKDPNSIISVWNQYSKRKDYKPNEA LYNQVINKLAQAKNFDAIEDIMQKIKLDKSCRLSNDFFHNVIKIYGQLAGRIKKAMETLFDMPKGYNCWPNVKSFNLVLNLLVSAKVFDVVHEVYLQAPM LGIEIDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMHGLCKKGKVEEAFGLLERMEKEGIDADTITFNILISGLRKQGKVVEGLELL ERMNIKGCEPNAGSYQEILYGLLDAEKYVEGKEFMVRMIGQGVDPSFVSYKKLVHGLCKERLLRDLDWVLKQMARQGFVPKMGMWVQMVQSVVSVRYSFN HVSLSEIVNCENI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14580			Pentatricopeptide repeat (PPR)...		Potri.001G379500 [exp]	0	1
AT4G38010			Pentatricopeptide repeat (PPR-...		Potri.012G135600 [exp]	1.41	0.8329
AT2G17140			Pentatricopeptide repeat (PPR)...		Potri.004G205600 [exp]	4.47	0.8162
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	8.12	0.7722
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	8.60	0.8346
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G027400 [exp]	8.83	0.8111
AT3G53440			Homeodomain-like superfamily p...		Potri.006G280800 [exp]	13.03	0.7978
AT4G14820			Pentatricopeptide repeat (PPR)...		Potri.010G086200 [exp]	14.28	0.7330
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	16.70	0.8204
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.018G152300 [exp]	21.63	0.7902
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	27.65	0.8118

Compare expression of checked genes

Potri.001G379500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.