Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 143 / 2e-36 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 129 / 7e-32 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G44510 46 / 4e-05 TAO1 target of AVRB operation1 (.1) AT3G04220 45 / 8e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44400 45 / 0.0001 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44670 44 / 0.0003 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007001 [exp] 387 / 2e-122 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 379 / 4e-120 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 379 / 3e-119 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 379 / 4e-119 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 360 / 6e-113 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 360 / 2e-112 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.003G200200 [exp] 351 / 6e-110 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 350 / 8e-109 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 342 / 6e-106 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016316 [exp] 325 / 4e-100 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10039540 [exp] 317 / 2e-97 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 306 / 5e-93 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 306 / 7e-93 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 277 / 1e-82 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 236 / 1e-71 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039548 [exp] 219 / 2e-66 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 165 / 8e-44 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 142 / 3e-36 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 142 / 5e-36 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G379601.1 pacid=42787713 polypeptide=Potri.001G379601.1.p locus=Potri.001G379601 ID=Potri.001G379601.1.v4.1 annot-version=v4.1 ATGCTTTTAACAGCCAATTTGAAGGGTAAGAAGCACCTTGAACATTTGCAGTTGAGATGGCACGGTGATACTGATGATGCAGCTCATGAAAGAGATGTAC TTGAGCAATTACAACCCCATACAAATGTGGAAAGCATTTCCATTATTGGTTATGCGGGTCCAACATTTCCAGAGTGGGTGGGGGACAGTTCTTTTTCTAA TATCGTGTCATTGACACTTAGTGAATGCAAGCGTTGCTCAAGCTTCCCACCACTTGGGCAGTTAGCCTCTCTAAAATACCATGTTGTCCAAGCTTTCGAT GGAGTAGTTGTAATTGGTACTGAGTTCTATGGAAGTTGCATGAATCCATTTGGAAACCTGGAAGAGTTAAGGTTTGAAAGAATGCCTCATTTGCATGAAT GGATTTCTAGTGAAGGTGGAGCTTTCCCTGTTCTCCGAGAGCTTTACATAAAAGAATGTCCTAACGTATCAAAGGCCTTGCCTAGTCATCTTCCTTCTTT AACAACCCTTGAGATTGAGAGATGTCAACAGCTCGCAGCTGCACTTCCAACGACACCGCCTATCTGCAGATTGAAGTTGGATGACATATCTCGTTATGTG CTAGTAACTAAATTGCCTTCTGGACTGCACGGACTCAGAGTTGATGCATTCAACCCCATAAGCTCCCTACTTGAGGGAATGGAGCGAATGGGTGCACCTT CCACAAATTTAGAAGAAATGGAAATCAGAAACTGTGGCTCACTTATGTCTTTCCCATTACAAATGTTCTCCAAGTTGAAGAGTTTTCAAATAAGTGAATG TCCGAATCTTGAATCCCTTGTTGCATATGAGAGAAGTCATGGGAATTTCACTCGCAGTTGTTTGAATTCTGTTTGTCCTGATTTGACACTGCTTCGTTTA TGGAATTGCTCAAATGTGAATCTCTGCCCAAATGTATCCTCTCCCTCCTCCCTTCGCTTGAGATTTTGCAACTTGTTAACTGTCCAGAACTTGTGTCATT CCCAGAAGGGGGCTTACCTGCCAAAACTACAGTCTCTTCAGATCAGGAATTGCAGAAAGCTCATTGCTGGCCGTATGGAATGGAATTTGCAAGCTCTCCA ATGTCTTTCACATTTCAGTTTTGGTGAGTATGAAGATATAGAATCCTTTCCCGAGAAGACACTGCTGCCCACCACTCTTATCATTGTTGGTATCTGGGAT CTTCAGAATCTGAAATCTCTAGACTATGAAGGCCTTCAACACCTCACCTCTCTTACACAAATGAGAATCTCCCACTGTCCCAATCTCCAATCCATGCCAG GAGGGGCTGCCATCTTCTCTTTCTTCTTTAATAATCTCTCAATGCCCTTTACTGGAACAAAGGTGTCTGCATAA
AA sequence Show only first row Show all	>Potri.001G379601.1 pacid=42787713 polypeptide=Potri.001G379601.1.p locus=Potri.001G379601 ID=Potri.001G379601.1.v4.1 annot-version=v4.1 MLLTANLKGKKHLEHLQLRWHGDTDDAAHERDVLEQLQPHTNVESISIIGYAGPTFPEWVGDSSFSNIVSLTLSECKRCSSFPPLGQLASLKYHVVQAFD GVVVIGTEFYGSCMNPFGNLEELRFERMPHLHEWISSEGGAFPVLRELYIKECPNVSKALPSHLPSLTTLEIERCQQLAAALPTTPPICRLKLDDISRYV LVTKLPSGLHGLRVDAFNPISSLLEGMERMGAPSTNLEEMEIRNCGSLMSFPLQMFSKLKSFQISECPNLESLVAYERSHGNFTRSCLNSVCPDLTLLRL WNCSNVNLCPNVSSPSSLRLRFCNLLTVQNLCHSQKGAYLPKLQSLQIRNCRKLIAGRMEWNLQALQCLSHFSFGEYEDIESFPEKTLLPTTLIIVGIWD LQNLKSLDYEGLQHLTSLTQMRISHCPNLQSMPGGAAIFSFFFNNLSMPFTGTKVSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G379601 [exp]	0	1
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Potri.001G281000 [exp]	14.17	0.6547
AT4G34200		EDA9	embryo sac development arrest ...		Potri.002G122700 [exp]	20.44	0.6536
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.017G144800 [exp]	36.67	0.6497
AT5G02420			unknown protein		Potri.001G212300 [exp]	43.12	0.6276
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.012G143500 [exp]	47.01	0.5998
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	67.40	0.6016

Compare expression of checked genes

Potri.001G379601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.