Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53590 833 / 0 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 826 / 0 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT1G05500 89 / 3e-18 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 86 / 3e-17 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G19830 82 / 5e-16 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 81 / 8e-16 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT1G20080 77 / 2e-14 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G50260 77 / 2e-14 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2) AT3G18370 72 / 9e-13 NTMCTYPE3, ATSYTF ,NTMC2T3 ,NTMC2TYPE3 C2 domain-containing protein (.1) AT1G03370 72 / 1e-12 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124000 [exp] 94 / 8e-20 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G241700 [exp] 91 / 6e-19 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 87 / 1e-17 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 87 / 2e-17 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 85 / 6e-17 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 81 / 1e-15 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.009G134200 [exp] 80 / 2e-15 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.010G223900 [exp] 74 / 2e-13 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 73 / 3e-13 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013710 [exp] 856 / 0 AT1G53590 817 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005578 [exp] 840 / 0 AT1G53590 812 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026192 [exp] 779 / 0 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10042475 [exp] 749 / 0 AT3G14590 741 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10038117 [exp] 89 / 3e-18 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 88 / 8e-18 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005069 [exp] 86 / 3e-17 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10013563 [exp] 80 / 3e-15 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 79 / 4e-15 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 78 / 9e-15 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G379800.3 pacid=42788578 polypeptide=Potri.001G379800.3.p locus=Potri.001G379800 ID=Potri.001G379800.3.v4.1 annot-version=v4.1 ATGTCAATAATTCATCATGCGGGCATTGTACTGTTTCTGCTATGGTTGCTTTCTTCCTTCAATCGATGCCATCCTATTGCCTTCATTCTTTCTCTCATCT ATCTTTTCTTGGTTCATGAGAGATATGTTATGAAACTGAGGAAGAAATTGCAGTATGAAGAAAGAAAACAAGCCTATCAAAAAAGGGTTCTTACTGATTC TGAAACAGTGCGATGGTTGAACCATACCGTGGAAAAGATATGGCCCATATGTATGGAACAGATTGCATCGCAGAAGATTCTGCTTCCCATTATACCTTGG TTCCTGGAAAAGTATAAACCATGGACCGCCAAAGAAGCTGTGGTTCGGCACATGTATTTGGGAAGAAATCCACCACTGTTCACAGAAATGAGGGTTCTTC GCCAATCTACTGGTGATGACCACTTGGTATTGGAGTTGGGCATGAATTTTTGCACAGCAGATGATATGAGTGCAATTCTTTCTATCAAATTAAGGAACAG GCTTGGATTTGGAATGTGGGCAAGGATGCATATGACAGGGATACATGTAGAAGGGAAGGTCTTGATTGGAGTGAAGTTTCTTCCCAATTGGCCTTTTCTT GGTCGTTTGCGGGTATGCTTTGCTGAGCCACCTTACTTCCAAATGACTGTAAAGCCCATCTTCGCCACTGGACTTGATGTTACTGAACTTCCAGGGATTG CTGGATGGCTGGACAAGCTTCTGTCAGTTGCTTTTGAACAGACACTAGTTCAGCCCAATATGCTAGTTGTTGACATGGAGAAATTTGTTTCACCAGGGTC AGAGGATTGGTTCTCTGTGGATGAGAAGGAACCCGTTGCTTATGCTAAAGTTGAAGTAATTGAAGCATCTGACATGAAACCATCAGATTTAAACGGATTG GCTGATCCATATGTGAAAGGACAACTTGGTCCTTACAGATTCAGGACAAAGACACAAAGGAAAACTCTATCTCCAAAGTGGCATGAGGAATTCAAGATCC CCATTTGTACCTGGGAATTACCTAATATTCTAGCTATTGATGTTCGTGACAAGGACCCTTTGTTTGATGATGCACTTGGGGTTTGCACAGTTGACATCAA TGAGCTCAAGGATCTTGGGAGGCATGACATGTGGTTGCCACTTCAGAACATTAAAATGGGGAGGCTGCATCTTGCAATAACTGTTCTGGAACAGAATGCA CAGGGAGGTGATTGTTCTCCTGATGGGGATACATTGACCAAGGAGCAAATACAGGACTCCTTCGCAAGTGATACTGCAAACAGAGCTTCCTTTTCATCTG AATCAACAGAGAAGTCTAGAGTTCCAGATAATTTTGAGCCTATCAACGTTGAAGGGCAAGAAGAGACTGGAATATGGGTTCATCACCCTGGAAGTGAAGT GCCACAAACATGGGAGCCCAGAAAAGGGAAGACCACAAATTCTTTCATCTCTCATTCTGCAGTATCCGGACCGCTTAACATTGACAGCAGCAGTGGTGAA GAAAATGCTGAGGGTGAAAATAAAAGGAAACGATTTAAGCGTGGTTTGCAGAAGATTGGCTCTGTATTCCATAGAAACGCTAAAAATGAGGATAATTTGA GCAGCATTGGGGAAAATGTTCCATCTCCTTATGATAATATTAAGGCAACGAATCAGAGGGAGATTGGTGTAAAGTTTGTAGTGGAAGACAGCCTTTTAGT GCCGAATTCTGGTTGTTTGAGCGAAGTTAATTTGGGTTCTGAGAAAAGTAGTCCAGAAAGCCCCCAGGGAGGAAATGCCAAAGGCATAGCGAAGAGTATT TTAAAACATGCTGAAAAGTCTGCTCGTAGCATAAAGCATGCACTCTCTCGAACAGGATCAAGGAGATCGCTCGCTGATCCATCAGTGGTGACAGAAAGAG ACATATATCCAGAGTCTGACTCTTCCGATGATCAATCTCGTTCATCCCCGCAAACAAAACCAGTTGTCTCCAGTCCCATACCCTCCTCCACCCCTTGCAA TGATGATTCTGTTAAACCCATGGAGAATATAATCGAGAGTGGTCCAAGTGAGCCCTCTATAAATTCTGGTGGCCAAATGAACAAGGTGGATGTTGAAGGT AATGGACTACAGTCCTCAAGCCCTAAGACCCCTTCAAGATTTGGAAGAAGTGAAGAAACTTCTTCTTGCCAGATGTGA
AA sequence Show only first row Show all	>Potri.001G379800.3 pacid=42788578 polypeptide=Potri.001G379800.3.p locus=Potri.001G379800 ID=Potri.001G379800.3.v4.1 annot-version=v4.1 MSIIHHAGIVLFLLWLLSSFNRCHPIAFILSLIYLFLVHERYVMKLRKKLQYEERKQAYQKRVLTDSETVRWLNHTVEKIWPICMEQIASQKILLPIIPW FLEKYKPWTAKEAVVRHMYLGRNPPLFTEMRVLRQSTGDDHLVLELGMNFCTADDMSAILSIKLRNRLGFGMWARMHMTGIHVEGKVLIGVKFLPNWPFL GRLRVCFAEPPYFQMTVKPIFATGLDVTELPGIAGWLDKLLSVAFEQTLVQPNMLVVDMEKFVSPGSEDWFSVDEKEPVAYAKVEVIEASDMKPSDLNGL ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFKIPICTWELPNILAIDVRDKDPLFDDALGVCTVDINELKDLGRHDMWLPLQNIKMGRLHLAITVLEQNA QGGDCSPDGDTLTKEQIQDSFASDTANRASFSSESTEKSRVPDNFEPINVEGQEETGIWVHHPGSEVPQTWEPRKGKTTNSFISHSAVSGPLNIDSSSGE ENAEGENKRKRFKRGLQKIGSVFHRNAKNEDNLSSIGENVPSPYDNIKATNQREIGVKFVVEDSLLVPNSGCLSEVNLGSEKSSPESPQGGNAKGIAKSI LKHAEKSARSIKHALSRTGSRRSLADPSVVTERDIYPESDSSDDQSRSSPQTKPVVSSPIPSSTPCNDDSVKPMENIIESGPSEPSINSGGQMNKVDVEG NGLQSSSPKTPSRFGRSEETSSCQM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Potri.001G379800 [exp]	0	1
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	4.24	0.7753
AT5G13590			unknown protein		Potri.008G047600 [exp]	4.58	0.7323
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	10.77	0.7280
AT5G50180			Protein kinase superfamily pro...		Potri.001G343900 [exp]	15.00	0.6633
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014308 [exp]	15.00	0.6954
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	19.20	0.6748
AT1G08440			Aluminium activated malate tra...		Potri.009G017900 [exp]	19.26	0.6821
AT5G17680			disease resistance protein (TI...		Potri.017G104301 [exp]	22.75	0.6635
AT3G11760			unknown protein		Potri.018G027200 [exp]	25.45	0.6750
AT5G24320			Transducin/WD40 repeat-like su...		Potri.001G086600 [exp]	27.27	0.6410

Compare expression of checked genes

Potri.001G379800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.