Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62730 327 / 4e-112 unknown protein AT1G47980 280 / 2e-93 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102000 [exp] 285 / 1e-95 AT1G47980 415 / 8e-147 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037797 [exp] 281 / 4e-94 AT1G47980 407 / 2e-143 unknown protein Lus10017081 [exp] 280 / 2e-93 AT1G47980 405 / 1e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF13668 [poplar] [flax] Ferritin_2 Ferritin-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G380000.2 pacid=42791195 polypeptide=Potri.001G380000.2.p locus=Potri.001G380000 ID=Potri.001G380000.2.v4.1 annot-version=v4.1 ATGGCTACTCTTTATTTCTTCTCTACTTTGGTTCTGACCATTGTTGTTTCGGTTCCAATCAATGTGTTAGGTTCAGCATACTGCGGACCGGTTGAGGCCA TCGACAAGGATCTGGTTCAATTCCCTCTCAACTTGGAATTCCTCGAAGCTGAGTTCTTTTTGAATGGCGCGCTCGGTCTTGGACTCGATGCCTTTGAACC GGGTTTTGCCGCAGGCGGTCCTCCTCCGATCGGTGCCCAAAAGGCCAACCTTGATCCTGTTACCCGTAGAATCATCGAGGAATTTGGTTATCAAGAAGTT GGCCATTTAAGGGCTATTATAACAACCGTTGGTGGAGTTCCAAGACCTCTATATGATCTCAGTCCTGAAGCATTCGCACAACTATTTGACAAAGCAGTTG GCTACAAATTGGACCCTCCATTTAACCCTTACTCCAACACAGTCAACTATCTCTTGGCATCGTATGCTATCCCTTATGTGGGACTGGTAGGATACGTTGG CACCATTCCACACTTGGCCAACTACACTTCTCGAAGACTTGTTGCGTCACTCTTGGGCGTAGAGTCTGGACAGGACGCAGTAATACGAACGTTACTCTAT GAGAAAGCTGACGAGAAAGTGTTGCCTTATGACATAACTGTGGCTGAATTCACCAACGCAATCTCAGGCATCAGGAATGAGCTTGCCATGTGTGGGATTA GAGATGAAGGTCTAATTGTACCCTTAAATCTTGGGGCCGAAAATCGAACTGAGAGTAACATTTTATCTGCAGATACCAACTCGCTCTCTTATGCACGTAC ACCACAACAGATTCTAAGGATAATTTATGGAACCGGCAGTGAGTACATGCCAGGCGGGTTTCTCCCTAGAGGTGGAAGTGGCAAGATTGCAAGGAGTTTT CTCGATAAGGTTTGA
AA sequence Show only first row Show all	>Potri.001G380000.2 pacid=42791195 polypeptide=Potri.001G380000.2.p locus=Potri.001G380000 ID=Potri.001G380000.2.v4.1 annot-version=v4.1 MATLYFFSTLVLTIVVSVPINVLGSAYCGPVEAIDKDLVQFPLNLEFLEAEFFLNGALGLGLDAFEPGFAAGGPPPIGAQKANLDPVTRRIIEEFGYQEV GHLRAIITTVGGVPRPLYDLSPEAFAQLFDKAVGYKLDPPFNPYSNTVNYLLASYAIPYVGLVGYVGTIPHLANYTSRRLVASLLGVESGQDAVIRTLLY EKADEKVLPYDITVAEFTNAISGIRNELAMCGIRDEGLIVPLNLGAENRTESNILSADTNSLSYARTPQQILRIIYGTGSEYMPGGFLPRGGSGKIARSF LDKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62730			unknown protein		Potri.001G380000 [exp]	0	1
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.018G080100 [exp]	1.73	0.9013
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013501 [exp]	2.82	0.8652
AT1G14600	GARP		Homeodomain-like superfamily p...		Potri.010G099600 [exp]	3.00	0.8929
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.001G029700 [exp]	3.16	0.8889
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Potri.002G226700 [exp]	7.07	0.8589
					Potri.009G055800 [exp]	13.74	0.8723
AT3G14470			NB-ARC domain-containing disea...		Potri.017G121700 [exp]	26.07	0.8053
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003800 [exp]	28.77	0.8901
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Potri.010G149900 [exp]	34.98	0.8472
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	38.72	0.8099	Pt-FZF.1

Compare expression of checked genes

Potri.001G380000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.