Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53580 407 / 2e-144 GLY3, GLX2-3, ETHE1 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) AT3G10850 80 / 3e-17 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) AT2G31350 66 / 4e-12 GLX2-5 glyoxalase 2-5 (.1.2) AT1G06130 66 / 5e-12 GLX2-4 glyoxalase 2-4 (.1.2) AT2G43430 57 / 5e-09 GLY1, GLX2-1 GLYOXALASE II, glyoxalase 2-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G204800 [exp] 418 / 1e-148 AT1G53580 395 / 3e-139 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Potri.019G062600 [exp] 91 / 2e-21 AT3G10850 415 / 1e-148 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.017G026500 [exp] 69 / 2e-13 AT1G06130 515 / 0.0 glyoxalase 2-4 (.1.2) Potri.007G131300 [exp] 60 / 4e-10 AT1G06130 503 / 0.0 glyoxalase 2-4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020760 [exp] 403 / 8e-143 AT1G53580 417 / 3e-148 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10007336 [exp] 358 / 2e-124 AT1G53580 385 / 4e-135 GLYOXALASE 2-3, ETHE1-LIKE, glyoxalase II 3 (.1.2) Lus10034259 [exp] 78 / 1e-16 AT3G10850 440 / 2e-158 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10029086 [exp] 77 / 4e-16 AT3G10850 443 / 1e-159 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10017706 [exp] 72 / 2e-14 AT1G06130 501 / 3e-180 glyoxalase 2-4 (.1.2) Lus10029004 [exp] 71 / 4e-14 AT3G10850 397 / 1e-141 GLYOXALASE 2-2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10039860 [exp] 64 / 3e-11 AT1G06130 493 / 6e-177 glyoxalase 2-4 (.1.2) Lus10033662 [exp] 60 / 3e-10 AT2G43430 447 / 1e-159 GLYOXALASE II, glyoxalase 2-1 (.1.2) Lus10018625 [exp] 45 / 4e-05 AT2G31350 418 / 5e-148 glyoxalase 2-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF00753 [poplar] [flax] Lactamase_B Metallo-beta-lactamase superfamily
Representative CDS sequence Show only first row Show all	>Potri.001G380100.1 pacid=42790012 polypeptide=Potri.001G380100.1.p locus=Potri.001G380100 ID=Potri.001G380100.1.v4.1 annot-version=v4.1 ATGCCAATTCAATTCATAAGATCCTCTTTGTTTGCATCACCAAAAAATCTTCTACGAACTCTTTTTCGGGTTACGAAGCTCAGATCGCTAGCAATGGGGT CTTACACGGCTTCTTCTCAGTCATCGAAGCTTTTTTTTCGCCAGCTCTTTGAAAAGGAATCTTCCACCTACACTTACCTTCTGGCTGATGTTTCTCATCC TGACAAACCCGCTCTTTTGATTGACCCTGTAGACAAGACTGTTGATAGAGACCTGTCTCTTGTTAAAGAACTGGGATTGAAGCTAATCTATGCCCTGAAC ACCCATGTTCATGCTGATCATATCACTGGAACAGGCCTCATTAAGACTAAATCTCCAGGTGTGAAATCTATTATTTCAAAAGCAAGTGGTTCCAAAGCTG ATATTCTGGTGGAACCTGGTGATAAAGTATCTTTTGGGGATCTTTTCCTTGAGGTTCGTGCCACACCTGGCCATACATCGGGTTGTGTTACCTATGTCAC AGGAGATGGACCTGATCAGCCTCAACCTAGGATGGCATTCACTGGTGATGCTCTATTGATACGTGGATGTGGGAGAACAGATTTTCAGGGTGGTAGTTCA CTGCAGCTTTACAAGTCAGTGCATTCGCAGATTTTTACATTGCCCAAGGACACATTGATCTATCCAGCTCATGACTACAAAGGGTTTTCGGTAAGCACAG TTGAAGAAGAAATGCTCTATAATCCTCGCCTAACAAAGAATCAGGAAGCATTCAAAGGCATCATGGAAAATCTGAACCTGGCATATCCGAAGATGATGGG CATTGCAGTCCCTGCAAACATGGTTTGTGGCTTGCAAGATACGACTTCTTAA
AA sequence Show only first row Show all	>Potri.001G380100.1 pacid=42790012 polypeptide=Potri.001G380100.1.p locus=Potri.001G380100 ID=Potri.001G380100.1.v4.1 annot-version=v4.1 MPIQFIRSSLFASPKNLLRTLFRVTKLRSLAMGSYTASSQSSKLFFRQLFEKESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYALN THVHADHITGTGLIKTKSPGVKSIISKASGSKADILVEPGDKVSFGDLFLEVRATPGHTSGCVTYVTGDGPDQPQPRMAFTGDALLIRGCGRTDFQGGSS LQLYKSVHSQIFTLPKDTLIYPAHDYKGFSVSTVEEEMLYNPRLTKNQEAFKGIMENLNLAYPKMMGIAVPANMVCGLQDTTS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.001G380100 [exp]	0	1
AT2G32280			Protein of unknown function (D...		Potri.017G040900 [exp]	9.05	0.8757
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.012G103500 [exp]	9.89	0.8729	NAC062
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Potri.015G147000 [exp]	10.19	0.8329
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.002G101900 [exp]	12.12	0.8360
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Potri.009G123400 [exp]	16.18	0.7364
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.003G146800 [exp]	19.89	0.7977
					Potri.016G114100 [exp]	20.29	0.7954
AT5G22870			Late embryogenesis abundant (L...		Potri.009G003800 [exp]	21.21	0.8697
					Potri.008G020500 [exp]	21.90	0.8297
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061600 [exp]	25.49	0.8627

Compare expression of checked genes

Potri.001G380100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.