Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17080 126 / 1e-37 Ribosomal protein L18ae family (.1) AT1G53560 99 / 4e-27 Ribosomal protein L18ae family (.1) AT1G29970 82 / 2e-20 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT3G14595 76 / 3e-18 Ribosomal protein L18ae family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005580 [exp] 155 / 8e-49 AT1G17080 190 / 2e-62 Ribosomal protein L18ae family (.1) Lus10013712 [exp] 150 / 8e-47 AT1G17080 186 / 6e-61 Ribosomal protein L18ae family (.1) Lus10028130 [exp] 83 / 2e-20 AT1G29970 150 / 6e-45 60S ribosomal protein L18A-1 (.1.2.3) Lus10026193 [exp] 53 / 3e-09 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10042474 [exp] 54 / 5e-09 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1) Lus10013704 [exp] 52 / 1e-08 AT1G29970 89 / 1e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10005572 [exp] 51 / 3e-08 AT1G29970 88 / 4e-22 60S ribosomal protein L18A-1 (.1.2.3) Lus10042485 [exp] 40 / 7e-05 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10005573 [exp] 38 / 0.0005 ND 47 / 8e-08
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G380200.1 pacid=42788869 polypeptide=Potri.001G380200.1.p locus=Potri.001G380200 ID=Potri.001G380200.1.v4.1 annot-version=v4.1 ATGAGCGACCAAGAGAAAAACAGGGGAGTTGTAGTAGATCACCGCCACCATGAAGACCAGCCACCGCCACCGCCACCACCCCAGCCCCAATATGGTACCT TTCAAGGAGTTGCCAATTATCCACCGCCTTCTCAAAGCCACGTCATCGGCTTTCCTCAGCCTGTCCCTCCTCCTGGTATCACCGCCGAACCTTATGCTCA GGGCTACCAAACCGTCCCAGGTTATGCTGTTGCTGAAGGAAGACCTGTGAGACAACGTCGCCTACCTTGTTGCGGTTGTGGTGTTGGCTGGTTCTTGTTT ATCATCGGTTTCTTTCTGGGTGCCATCCCCTGGTATATTGGGTTATTTATCATAGCTTGTATGAGGATAGATCCCCGAGAGAAACCTGGATATGTTGCTT GCACCATTGCTGCTATTCTTGCAACAATTGCAATTATTCTTGGTGCAACAAAGGGAGCTGATGAGTGGTAA
AA sequence Show only first row Show all	>Potri.001G380200.1 pacid=42788869 polypeptide=Potri.001G380200.1.p locus=Potri.001G380200 ID=Potri.001G380200.1.v4.1 annot-version=v4.1 MSDQEKNRGVVVDHRHHEDQPPPPPPPQPQYGTFQGVANYPPPSQSHVIGFPQPVPPPGITAEPYAQGYQTVPGYAVAEGRPVRQRRLPCCGCGVGWFLF IIGFFLGAIPWYIGLFIIACMRIDPREKPGYVACTIAAILATIAIILGATKGADEW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	0	1
					Potri.001G323200 [exp]	1.73	0.8686
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.016G030900 [exp]	2.82	0.7930
AT3G47300		SELT	SELT-like protein precursor (....		Potri.009G047000 [exp]	3.87	0.7832
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	3.87	0.7596
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.012G058200 [exp]	11.48	0.7646	Pt-DR1.2
					Potri.017G061800 [exp]	14.28	0.7385
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.009G018900 [exp]	16.49	0.7149
AT2G38640			Protein of unknown function (D...		Potri.006G113400 [exp]	20.17	0.7395
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Potri.014G113700 [exp]	27.38	0.6829
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.008G103900 [exp]	27.69	0.7319	Pt-CP1.2

Compare expression of checked genes

Potri.001G380200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.