Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78510 597 / 0 SPS1 solanesyl diphosphate synthase 1 (.1.2) AT1G17050 596 / 0 SPS2 solanesyl diphosphate synthase 2 (.1) AT2G34630 239 / 7e-75 GPPS, GPS1 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) AT4G36810 136 / 3e-36 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT2G18620 128 / 2e-33 Terpenoid synthases superfamily protein (.1) AT2G18640 127 / 5e-33 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G14510 124 / 2e-32 Polyprenyl synthetase family protein (.1) AT3G20160 120 / 1e-30 Terpenoid synthases superfamily protein (.1) AT3G32040 115 / 1e-28 Terpenoid synthases superfamily protein (.1) AT2G23800 113 / 8e-28 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G101301 [exp] 608 / 0 AT1G17050 427 / 2e-148 solanesyl diphosphate synthase 2 (.1) Potri.011G099500 [exp] 588 / 0 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101200 [exp] 494 / 3e-175 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1) Potri.010G138800 [exp] 239 / 6e-75 AT2G34630 551 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.006G135300 [exp] 239 / 9e-75 AT2G34630 592 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Potri.017G124700 [exp] 134 / 1e-35 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G090600 [exp] 132 / 1e-34 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 130 / 7e-34 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 125 / 5e-32 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005570 [exp] 610 / 0 AT1G78510 564 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10042491 [exp] 595 / 0 AT1G17050 548 / 0.0 solanesyl diphosphate synthase 2 (.1) Lus10013703 [exp] 586 / 0 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10023287 [exp] 243 / 2e-76 AT2G34630 541 / 0.0 GERANYLPYROPHOSPHATE SYNTHASE, geranyl diphosphate synthase 1 (.1.2) Lus10022499 [exp] 130 / 8e-34 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 128 / 5e-33 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028509 [exp] 119 / 6e-30 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 116 / 3e-28 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 110 / 1e-26 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 108 / 6e-26 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00348 [poplar] [flax] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Potri.001G380500.1 pacid=42793562 polypeptide=Potri.001G380500.1.p locus=Potri.001G380500 ID=Potri.001G380500.1.v4.1 annot-version=v4.1 ATGATGTCAATGACATGCCATAATCTTGATTTTGGAAGGGCTAAACTTGATTTGGTGGCTTGTGGCTGCTCCTCCAATGCTTCAATAGATAGGTATTCAG TGAGGAATTATGCCAAGTCTGTTTCTAAGAGCTGTAACAGAGATTATGGTTCCAGGAGACTGGTTTGTAGCAGGCGAGATATTGCTAGGTGTCGAGTTTC CCCAACAAAGACCCCTGAGACTTTACCTGCGGGAGTTGCTGAAGGTCCTGCAGGACTTCTGAAATTGAAGAAAGATTCGAGAGAATCAATTTCAATAACA AATTTGTTTGAAGTGGTTGCAGATGATCTCCAGACTCTTAATCAAAATCTTCAGTCGATTGTTGGTGCAGAAAATCCAGTTTTGATGTCTGCAGCTGAGC AGATATTTGGTGCTGGTGGGAAGAGAATGCGACCAGCTCTGGTCTTTCTAGTTTCAAGAGCCACGGCTGAAGTAGTAGGGATGAAGGAACTTACAACTGA ACATCGACGTTTAGCAGAGATTATCGAGATGATCCACACTGCAAGTTTAATACATGATGATGTACTGGATGAAAGTGACATGCGAAGAGGGAAGGAAACT GTTCATCAACTCTATGGTACAAGGGTAGCGGTACTGGCTGGGGACTTCATGTTTGCTCAGTCGTCATGGTACCTAGCAAATCTTGAAAATATTGAAGTCA TTAAGCTTATCAGCCAGGTTATTAAGGATTTTGCTAGTGGTGAAATAAAGCAGGCATCTAGCCTATTTGATTGTGATGTTGAACTTGAAGAGTATTTGAT CAAGAGCTATTACAAGACAGCCTCCTTGATTGCTGCTAGCACCAAAGGAGCTGCTATTTTTAGCGGGGTGGACAGTAGTGTTTCCATGCAGATGTATGAC TATGGAAAGAATCTTGGTCTCTCCTTCCAAGTTGTGGATGACATACTAGATTTTACACAGTCAGCAGAGCAGCTGGGGAAGCCAGCTGGGAGTGACCTGG CTAAGGGGAACCTGACTGCTCCAGTAATATTTGCTCTAGAGCAATCACCAAAACTAAGAGAAATAATCGAGTCTGAATTCTGTGAGAGTGGTTCCATTGA TGAAGCTATCGAGCTGGTTAAGAGCTCTGGGGGCATTGAAAGGGCGCAGGAATTGGCGAAAGAGAAAGCTGATCTTGCAATTCAGAATCTCAGATGCCTT CCTCAGGGCTCCTATCAATCAGCTCTCGAGGAGATGGTGCTGTACAATCTCGAACGGATTCATTAG
AA sequence Show only first row Show all	>Potri.001G380500.1 pacid=42793562 polypeptide=Potri.001G380500.1.p locus=Potri.001G380500 ID=Potri.001G380500.1.v4.1 annot-version=v4.1 MMSMTCHNLDFGRAKLDLVACGCSSNASIDRYSVRNYAKSVSKSCNRDYGSRRLVCSRRDIARCRVSPTKTPETLPAGVAEGPAGLLKLKKDSRESISIT NLFEVVADDLQTLNQNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEVVGMKELTTEHRRLAEIIEMIHTASLIHDDVLDESDMRRGKET VHQLYGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVIKDFASGEIKQASSLFDCDVELEEYLIKSYYKTASLIAASTKGAAIFSGVDSSVSMQMYD YGKNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEQSPKLREIIESEFCESGSIDEAIELVKSSGGIERAQELAKEKADLAIQNLRCL PQGSYQSALEEMVLYNLERIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.001G380500 [exp]	0	1
					Potri.005G182750 [exp]	1.00	0.9771
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.008G171000 [exp]	2.44	0.9646	PGR5.2
AT5G38660		APE1	acclimation of photosynthesis ...		Potri.004G102100 [exp]	3.46	0.9679
AT5G13650		SVR3	SUPPRESSOR OF VARIEGATION 3, e...		Potri.006G053000 [exp]	4.00	0.9704
AT2G04039			unknown protein		Potri.014G172800 [exp]	4.58	0.9702
					Potri.002G167500 [exp]	4.89	0.9572
AT3G52740			unknown protein		Potri.009G163900 [exp]	6.00	0.9566
AT3G56010			unknown protein		Potri.008G070700 [exp]	6.32	0.9536
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007400 [exp]	6.48	0.9576
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Potri.005G062700 [exp]	6.92	0.9424

Compare expression of checked genes

Potri.001G380500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.