Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78530 534 / 0 Protein kinase superfamily protein (.1) AT5G62710 310 / 6e-101 Leucine-rich repeat protein kinase family protein (.1) AT1G31420 310 / 8e-101 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT2G35620 304 / 1e-98 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT3G17420 258 / 2e-82 GPK1 glyoxysomal protein kinase 1 (.1) AT5G07280 272 / 3e-82 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 270 / 8e-82 BRL3 BRI1-like 3 (.1) AT1G55610 270 / 1e-81 BRL1 BRI1 like (.1.2) AT1G01540 255 / 5e-81 Protein kinase superfamily protein (.1.2) AT3G59110 250 / 1e-78 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G071100 [exp] 312 / 1e-101 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 296 / 2e-95 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G105000 [exp] 293 / 3e-94 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G101900 [exp] 256 / 6e-86 AT1G78530 210 / 2e-68 Protein kinase superfamily protein (.1) Potri.012G139000 [exp] 281 / 4e-85 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G141200 [exp] 275 / 4e-83 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G116900 [exp] 273 / 5e-83 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.001G472900 [exp] 273 / 1e-82 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.011G169600 [exp] 273 / 2e-82 AT1G55610 1500 / 0.0 BRI1 like (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005569 [exp] 476 / 9e-170 AT1G78530 462 / 2e-164 Protein kinase superfamily protein (.1) Lus10033104 [exp] 319 / 4e-104 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 315 / 7e-103 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034753 [exp] 306 / 2e-99 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10014996 [exp] 280 / 5e-85 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033291 [exp] 275 / 4e-84 AT1G31420 769 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Lus10038875 [exp] 277 / 1e-83 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10029241 [exp] 254 / 1e-79 AT5G45780 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007292 [exp] 254 / 2e-79 AT5G45780 801 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007919 [exp] 251 / 3e-79 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G380800.4 pacid=42788703 polypeptide=Potri.001G380800.4.p locus=Potri.001G380800 ID=Potri.001G380800.4.v4.1 annot-version=v4.1 ATGACGAACAGAATCATCTCTGCTTCTAAGGCTCAAATGGCCAAGGCTCAGTATATCGCGTTCTACATCACAGTATGCTGCATTGCTTTTATAGTATCAA AGATAGTTATTTCAGTCCTTCTCTACAAGCGATGGAAAAGAAAGCACTTGATTTGTGAAGAAGATGGCTTTTCAGGTGGGAAGATGGTGATGTTCAAGTC TGCAATGATGCAATCTCTAAAATCCGATGAGCTCTTCAAGAAGACACTGAAATTGAGCTACAAGGACATAATTGGATCCGGAGGGTATGGGACGGTGTAC AAGTTGATGCTAAACGAGTCTACTGCATTGGCTGTGAAAAGACTAAACAGGGGTACTGCGGAAAGAGATCGAGGATTCGAGAGAGAGCTGGAGGCCATGG GAGATATAAAGCATAGGAATATTCTCGCTCTTCATGGATATTGCACTACCCCTCAATATAATCTTCTCATATATGAGCTAATGCCTAATGGAAGTTTGGA CACGTTCCTGCATGGAAGATCAGTAGAGACTAAGCTTTTGGATTGGCCTTCCAGATATAAGATAGCACTGGGTGCAGCAAGAGGAATATCATACCTGCAT CATGATTGCATCCCCCACATAATTCACCGAGATATCAAGTCAAGTAATATATTGCTGGATCAAAACATGGAAGCTCAAGTTTCTGATTTCGGATTGGCCA CATTGATGGAACCTGACAAGACTCATGTTTCCACGTTAGTAGCAGGAACTTTTGGATACCTAGCTCCTGAGTACTTTGATACAGGGAAGGCGACCGTGAA AGGGGATGTATACAGCTTCGGAGTTGTCCTGCTCGAACTTCTAACTGGAAGGAAACCAACAGATGAAGAGTTTTTCAAGGAAGGAACCAAGCTTGTAACA TGGGTGAAGGCAGTTGTCGAACATAAAAGAGAAGAGTATGTCCTTGACAGTAGCTTAAAGTGCAGTCCTGCTGATGAGATTAACAAAGTATTCAGAATTG CATTCAGGTGCCTTGAACCAGAGCCCTCCAAGAGACCTACCATGGCTGATGTTGTCAAGATGCTTGAGCAAGCTAAATCAGAGAGGGTTGTGGAAGAGTA TTAA
AA sequence Show only first row Show all	>Potri.001G380800.4 pacid=42788703 polypeptide=Potri.001G380800.4.p locus=Potri.001G380800 ID=Potri.001G380800.4.v4.1 annot-version=v4.1 MTNRIISASKAQMAKAQYIAFYITVCCIAFIVSKIVISVLLYKRWKRKHLICEEDGFSGGKMVMFKSAMMQSLKSDELFKKTLKLSYKDIIGSGGYGTVY KLMLNESTALAVKRLNRGTAERDRGFERELEAMGDIKHRNILALHGYCTTPQYNLLIYELMPNGSLDTFLHGRSVETKLLDWPSRYKIALGAARGISYLH HDCIPHIIHRDIKSSNILLDQNMEAQVSDFGLATLMEPDKTHVSTLVAGTFGYLAPEYFDTGKATVKGDVYSFGVVLLELLTGRKPTDEEFFKEGTKLVT WVKAVVEHKREEYVLDSSLKCSPADEINKVFRIAFRCLEPEPSKRPTMADVVKMLEQAKSERVVEEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78530			Protein kinase superfamily pro...		Potri.001G380800 [exp]	0	1
AT1G05100		MAPKKK18	mitogen-activated protein kina...		Potri.014G155000 [exp]	11.22	0.6838	MAPKKK15.2
AT3G02740			Eukaryotic aspartyl protease f...		Potri.019G054900 [exp]	103.11	0.5992
AT5G13500			unknown protein		Potri.001G275600 [exp]	105.83	0.5663
AT1G74030		ENO1	enolase 1 (.1)		Potri.012G057500 [exp]	124.44	0.5831

Compare expression of checked genes

Potri.001G380800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.