Plant FIBer expression Database

Potri.001G380900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78540 592 / 0 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
AT1G17040 582 / 0 STATLA, ATSHA STAT-TYPE LINKER-SH2 DOMAIN FACTOR A, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN A, SH2 domain protein A (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G102100
[exp]
1170 / 0 AT1G78540 591 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Potri.008G139800
[exp]
56 / 6e-10 AT1G78540 51 / 4e-09 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013716
[exp]
755 / 0 AT1G78540 622 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
Lus10005584
[exp]
752 / 0 AT1G78540 605 / 0.0 STAT-TYPE LINKER-SH2 DOMAIN FACTOR B, ARABIDOPSIS THALIANA SH2 DOMAIN PROTEIN B, SH2 domain protein B (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0004 Concanavalin PF13385 Laminin_G_3 Concanavalin A-like lectin/glucanases superfamily
Representative CDS sequence
>Potri.001G380900.1 pacid=42793147 polypeptide=Potri.001G380900.1.p locus=Potri.001G380900 ID=Potri.001G380900.1.v4.1 annot-version=v4.1
ATGGGTAGTGATAATAATAATGTGATAAACAGAAAAGATTACATGTTACTGAAAGATTTCAGAAAGGAAATTGAAGTTGAAAATGAAAAGGATTTTTCTA
TTTCTTTTTGGGTTTATCTTATCAACTCCTCCACCGCAGCATTTCCTGCTACAATCATCAAACAGGTTTACTCGGATATTAGCAGCGATGCTCCTTTTCT
TGTTCTAAATGAGAAGAAGATAATTACACTTTTTCCATTCCTCCATGCTCACAAAGAAACTACAAATTTCAGTAATTCTACATCTATGGAGATTGAGTTT
CCTCTGGAAAATTGGATTCATGTTGGATGTGAGGTTGTTACCGATATGTTGCGGTTTCACATTAATGGGAAGATTGTAAGAGAGCAGCCTCAGTCATTCT
CCCTTGACAAAAGCTCGAACTCCAATGGACTGAGGAAGATAACATTAGCTGGTGCTGGTGGAGATGATGCCTTGCAGGGTTATGTTCACCATGTAGAAGT
CTTGCCTTTAAGCATGTCCATTAAGGAACACTATGTTAAGGACCCACCTGTACGATTATCGATTGATCTCTCTTCAACCTCTGAAATTGATGAAGACAGT
GATAGAATTTGGAATATTGTTGGAGGCAAGGCTTCATGTCGAAGGATTTTTTCCTTGGATGTGGTTTTATTAAATGCAATATGCCAGGCTGTAAACAAGG
AATTGGAGATTGTTGCTTCACTGGTTTATGCGGACAGTGGGCTTCCCGTGGAGAAAACATCTGATGATGAAGATCCCCTTTTGGCAAGCTGTGATGGGAT
AGAATTTGCTTCTTATGATAGACCAGGCAAACTATTGCATGGGCATGCATCCTTGAAGCTCAAAATATCCCAGCTTTCATCCAAGTGTGATAATAGGCTT
TTCCGCATTAAATTAGAAATTCCAAAATTCAGTGGGTATCATTTCCTAGAGGCATTTTCCCATCCAATCCGTTGCATCTCTCGAAGTCGTAATCCTCGGA
CATCTCTGACATGGAAAAGGCCAACTTCTGCTGCTGACCCTTTAAATAAACATCAATCATTTGGACTATGTAATGGATCCTTGGAATTGCAGCAAAACTC
TATCCACAAAATAAAACCTAGTCCATCATCAAAACGGATCAAACTGGGGCAAGAAAGGACATCTGCAACGGGGCAGCCAGATGTGGCATGCTACTCTGAT
ACTTGGACAACTAATCAGGTTGCAAATGCAGTAGGGACACAATTAGCCAGGGGAGCAGAGAATATTGAAGAAGCAGACAATTCACCATCTGTATCAGACA
GTATTGAAGAAAGGTTATCGGATTTCAATATTATGTCAAGTGGCGGCTATTCAATTTCTGATGTGATCATTTTTAAATACTGCCTGGGAGGCTTGACTGA
CAGGGCTCTTCTGCTGAAGGAGGTTGCAACCTCTGCCTCTGAAGAAGAGCTTTTTAGACTTGCAAATGAGGTTTCATTGTACTCAGGATGTTCACACCAC
AGGCGACAGATAGTGATATCAAAGAGGTTGATAGAGGAAGGAACCAAATTTTGGAATTCAATCTCACAAAACAACCGCCATATTCAATGGGAGAATGTGA
TTTTTGAGATTGAAGAGCGATTTATGAGGATTACTTGCTCCAATACCAGATCACTTACCGAACAGGATTTTGAGCTCCTGAGGAGAATTTCTGGATGTGG
GGAATATATGGCTCAAGAAAATTTTGAGAAGATATGGCGTTGGTTGTACCCTGTTGCTTTTACATTAACGAGCGATTCAATAAACACAATATGGAATTCT
ACATCACCAAAGTGGATAGAAGGATTTATTACAAAGGAAGAAGCAGAACTGTCACTTCAGGGTCCTCGGGGTCTTCAAGAGCCTGGAACATTTGTACTGC
GCTTTCCTACTTCAAGGAGCTGGCCCCATCCTGATGCAGGTTGCTTAATTGTGACCTACGTTGGCAGTGATTACACTGTTCACCACAGGCTTCTTTCCCT
TGATTATATCTACAGTTGTGAGGAAAGCGAGATGAATGGGAAATCACTAGAAGACATGCTGTTCGCCGAGCCTGAGCTCTCTCGATTAGGAAGGATAGTA
AGACAACGTCAATTAACTTGA
AA sequence
>Potri.001G380900.1 pacid=42793147 polypeptide=Potri.001G380900.1.p locus=Potri.001G380900 ID=Potri.001G380900.1.v4.1 annot-version=v4.1
MGSDNNNVINRKDYMLLKDFRKEIEVENEKDFSISFWVYLINSSTAAFPATIIKQVYSDISSDAPFLVLNEKKIITLFPFLHAHKETTNFSNSTSMEIEF
PLENWIHVGCEVVTDMLRFHINGKIVREQPQSFSLDKSSNSNGLRKITLAGAGGDDALQGYVHHVEVLPLSMSIKEHYVKDPPVRLSIDLSSTSEIDEDS
DRIWNIVGGKASCRRIFSLDVVLLNAICQAVNKELEIVASLVYADSGLPVEKTSDDEDPLLASCDGIEFASYDRPGKLLHGHASLKLKISQLSSKCDNRL
FRIKLEIPKFSGYHFLEAFSHPIRCISRSRNPRTSLTWKRPTSAADPLNKHQSFGLCNGSLELQQNSIHKIKPSPSSKRIKLGQERTSATGQPDVACYSD
TWTTNQVANAVGTQLARGAENIEEADNSPSVSDSIEERLSDFNIMSSGGYSISDVIIFKYCLGGLTDRALLLKEVATSASEEELFRLANEVSLYSGCSHH
RRQIVISKRLIEEGTKFWNSISQNNRHIQWENVIFEIEERFMRITCSNTRSLTEQDFELLRRISGCGEYMAQENFEKIWRWLYPVAFTLTSDSINTIWNS
TSPKWIEGFITKEEAELSLQGPRGLQEPGTFVLRFPTSRSWPHPDAGCLIVTYVGSDYTVHHRLLSLDYIYSCEESEMNGKSLEDMLFAEPELSRLGRIV
RQRQLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.001G380900
[exp]
0 1
AT1G25500 Plasma-membrane choline transp... Potri.008G118200
[exp]
2.44 0.7632
Potri.003G152800
[exp]
4.89 0.7515
AT4G31080 Protein of unknown function (D... Potri.006G281400
[exp]
7.93 0.6709
AT5G64880 unknown protein Potri.007G081700
[exp]
8.12 0.6779
AT3G50620 P-loop containing nucleoside t... Potri.007G042100
[exp]
19.36 0.6215
AT3G02630 Plant stearoyl-acyl-carrier-pr... Potri.010G179400
[exp]
21.21 0.6570
AT1G78060 Glycosyl hydrolase family prot... Potri.002G093900
[exp]
22.44 0.6179
Potri.002G148550
[exp]
23.49 0.6486
AT5G23720 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, ... Potri.012G105800
[exp]
28.61 0.6475 Pt-PHS1.1
AT2G44150 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN ... Potri.017G000400
[exp]
33.94 0.6593

Potri.001G380900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.