Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) AT4G16580 196 / 3e-59 Protein phosphatase 2C family protein (.1) AT2G30170 127 / 8e-35 Protein phosphatase 2C family protein (.1.2) AT4G33500 126 / 1e-32 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102200 [exp] 433 / 2e-155 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 394 / 1e-139 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 236 / 8e-76 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.014G042800 [exp] 206 / 1e-62 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.005G125700 [exp] 186 / 8e-56 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.007G028900 [exp] 183 / 5e-55 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.001G089201 [exp] 140 / 4e-41 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.001G282500 [exp] 131 / 5e-36 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016309 [exp] 200 / 2e-60 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10014413 [exp] 196 / 2e-60 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 196 / 3e-60 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10023916 [exp] 194 / 3e-59 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 150 / 2e-44 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 142 / 5e-40 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2) Lus10031355 [exp] 135 / 2e-37 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF07228 [poplar] [flax] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Potri.001G381000.1 pacid=42789951 polypeptide=Potri.001G381000.1.p locus=Potri.001G381000 ID=Potri.001G381000.1.v4.1 annot-version=v4.1 ATGATTATCAAAAAGAGAAGAATAGCTGTGCGAAGCCAGTCAAATTTTCAAGCCACGGTTTCGGTTTCTGATGATGATGAAAGCGGTGAGAAGTTGAGGA TGAATATGGGAACCTGTTACTTCCCTAAAGATATCGAGTCGAACCCAGAAAGTCTAGGCCAAGACGCCCATTTTATTTGCCAAGAAAGACAAACCTTTGG AGTGGCTGATGGTGTTGGTGGTTGGGCTAAAAAAGGTATTGATTCTGGGATTTTTGCCAGAGAACTCATGTCCAATTATCTTACTTCTCTTCGATCCTTA GAGCCTGGTCGGGCTGTTAATCTAAAGAAGATATTGTTAAAAGCGCATTCCAAGACCGCTGCTATAGGATCATCCACTGCCTGTGTTGTTAGCCTTAAAG GAGACCATTTGTGTTATGCCAATGTGGGTGACAGCGGTTTCATGGTTTTTAGAGGGAAAAGGCTTGTTTACAGGTCACCAACACAGCAGAATTATTTCAA CTGTCCTTTTTCCTTGGGGAATTGGGTTGGGGAGGGTAAGCGCCCGGTTTCGGTTTTCCTTGGTGAATTTGATGTAGAGCAGGGGGACATTGTGGTTGCT GGTTCTGATGGAGTGTTTGATAATCTTTTTGGCTCTGAGATTGAGGAAATTCTTCAAGAATCTGAAGGAAGACCTTGGCCTCAGGACCTTGCATGGACCA TCGCAACTGTTGCATCCATGAATTCAACCAGCGAAGAATATGACTCTCCCTTTGCAATTGCTGCTGAGTCTGAAGGAATCGAGCACGTTGGAGGCAAAAT TGATGACATTACTGTCATTGTTGCTATGATTGAGTTGGAACAGCCTAGGGTTAGCCAGGAGGAGGAGGAGGAGTAA
AA sequence Show only first row Show all	>Potri.001G381000.1 pacid=42789951 polypeptide=Potri.001G381000.1.p locus=Potri.001G381000 ID=Potri.001G381000.1.v4.1 annot-version=v4.1 MIIKKRRIAVRSQSNFQATVSVSDDDESGEKLRMNMGTCYFPKDIESNPESLGQDAHFICQERQTFGVADGVGGWAKKGIDSGIFARELMSNYLTSLRSL EPGRAVNLKKILLKAHSKTAAIGSSTACVVSLKGDHLCYANVGDSGFMVFRGKRLVYRSPTQQNYFNCPFSLGNWVGEGKRPVSVFLGEFDVEQGDIVVA GSDGVFDNLFGSEIEEILQESEGRPWPQDLAWTIATVASMNSTSEEYDSPFAIAAESEGIEHVGGKIDDITVIVAMIELEQPRVSQEEEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66720			Protein phosphatase 2C family ...		Potri.001G381000 [exp]	0	1
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161600 [exp]	1.00	0.9635
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.014G087700 [exp]	2.44	0.9039	Pt-BRH1.1
AT5G62865			unknown protein		Potri.018G114200 [exp]	3.87	0.8872
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138800 [exp]	4.47	0.9078	DREB47
AT2G45360			Protein of unknown function (D...		Potri.003G115200 [exp]	4.47	0.8961
AT4G34320			Protein of unknown function (D...		Potri.009G112430 [exp]	4.89	0.8844
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Potri.014G078700 [exp]	6.00	0.8566	BAP2.2
AT2G18630			Protein of unknown function (D...		Potri.007G031200 [exp]	11.83	0.7967
					Potri.018G072101 [exp]	12.64	0.8680
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080000 [exp]	12.72	0.8127

Compare expression of checked genes

Potri.001G381000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.