Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TDY1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14720 875 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 845 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT2G42880 772 / 0 ATMPK20 MAP kinase 20 (.1) AT5G19010 689 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT3G18040 660 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G73670 654 / 0 ATMPK15 MAP kinase 15 (.1) AT1G18150 647 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 616 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 343 / 3e-113 ATMPK4 MAP kinase 4 (.1) AT4G11330 335 / 3e-110 ATMPK5 MAP kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102500 [exp] 1065 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 867 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 860 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.010G029700 [exp] 705 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 700 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.012G048600 [exp] 675 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.015G040300 [exp] 670 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.010G112200 [exp] 638 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 632 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005568 [exp] 922 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10013702 [exp] 919 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10041234 [exp] 672 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 660 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10021945 [exp] 660 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10027248 [exp] 627 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10021784 [exp] 624 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10034601 [exp] 525 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10017518 [exp] 345 / 1e-113 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10027091 [exp] 344 / 7e-113 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF06293 [poplar] [flax] Kdo Lipopolysaccharide kinase (Kdo/WaaP) family
Representative CDS sequence Show only first row Show all	>Potri.001G381300.1 pacid=42789663 polypeptide=Potri.001G381300.1.p locus=Potri.001G381300 ID=Potri.001G381300.1.v4.1 annot-version=v4.1 ATGCAACAAGATCATCCAAAGAAGGACTTAAAAGAGATTGACTTTTTCACCGAGTATGGGGATGCCAATAGATACAAGATTCTAGAAGTTATTGGAAAGG GAAGCTATGGAGTTGTTTGTGCTGCAATTGACACTCATACTGGAGACAAGGTGGCAATAAAGAAAATCAATGATGTTTTTGAGCATATTTCTGATGCTAT TCGAATCTTGAGAGAAGTAAAGTTACTTAGGCTTTTACGGCATCCTGATATCGTTGAGATCAAGCGAATCATGTTGCCGCCCTCAAAGAGAGAATTCAAA GACATATTTGTTGTTTTTGAGCTCATGGAATCTGATCTTCACCAAGTCATCAAAGCTAATGATGACTTGACACGGGAACACCATCAGTTCTTTCTTTATC AGATGTTACGTGCACTGAAATATATGCATACAGCAAATGTGTATCATAGAGATCTTAAACCCAAGAATATATTGGCAAATGCAAATTGCAAACTTAAAGT ATGTGATTTTGGGCTGGCACGAGTAGCATTTAGTGATACACCAACAACTGTTTTTTGGACGGACTATGTTGCTACAAGATGGTATAGAGCGCCGGAGCTG TGCGGGTCTTTCTTTTCAAAGTATACTCCAGCAATTGATATTTGGAGCATTGGCTGCATCTTTGCTGAAGTATTGACAGGGAAGCCATTGTTTCCGGGTA AAAGTGTTGTTCATCAATTGGATTTAATTACCGACCTTCTTGGGACGCCCTCATCAGAAACCATTTCTGGAGTACGGAATGACAAGGCAAGGAAATACCT GACTGAAATGAGGAAAAAACAGCCTGTGCCATTTGCACAGAAATTTCTAAATGTAGATCCGTTGGCACTCAGGCTACTGCAAAGGCTACTAGCATTTGAT CCAAAAGATAGACTGACTGCTGAAGAGGCATTAGCCGACCCTTACTTTAAGGGCCTAGCTAAAGTTGAGAGAGAACCATCCTGTCAGCCAATCTCAAAGT TGGAGTTTGAGTTTGAAAGGAGAAGGGTAACAAAGGAAGATGTTAGGGAACTGCTATACCGTGAAATACTGGAATACCATCCACAGCTACTCAAAGACTA CATGAATGGAAATGAAAACACTAATTTTCTCTATCCTAGTGCCATAGGGCAATTTAGAAAGCAGTTTGCATATCTTGAGGAAAACAGTGGTAGAAGTGGA CCAGTGATACCTCCAGAGAGGAAGCATGTCTCACTTCCACGGTCTACAGTTCACTCAAACACAATCCCTCCTAATATGCAATCAACTTCAACCTCATTTG ACAACAGGCTGGTTACAGAAGACACTTCTAAAAATTTTAGAGTACCAGATGCAAGTTTTGGAAATCCAGCAAAGGTTGCAAGGCCCCCTCCGCGAGTGCC ATCAGCAAAGCAGGGGAGAGTTGTGGGATCGGCTGTACCCTATGACAATGGCAGAAATGTCAAAGATGCCTATGATTCAAGGATATTTTATAGAAACTCA GTTCTGCCTCCCCAGACTGTCTCTCCGCACTGCTTCTTCAGGACAAACACAATGGTGCAGGAGAAGTCTATCTCCGAGCCTGAAAAAGACTCACAAACCA AACAGCAACCTCCTCTGTGTAATATGGCTGCCAAGCCATCCTCTGGGATGGCCATGGATGTGAACGCCTACCCATATTGCCAACCACAAGCTAGGGTGGA ACAGTTAAATGAGAGAATTGCTATTGATGCAAAACTGCTGCAGGCACAATCTCAGTTTGGTCCAGTTGGCGCTGCTGCTGTAGCTGTAGCTGCTCATAGG AATGTCGGTACTGTTCAGTATGGATTAACTTAG
AA sequence Show only first row Show all	>Potri.001G381300.1 pacid=42789663 polypeptide=Potri.001G381300.1.p locus=Potri.001G381300 ID=Potri.001G381300.1.v4.1 annot-version=v4.1 MQQDHPKKDLKEIDFFTEYGDANRYKILEVIGKGSYGVVCAAIDTHTGDKVAIKKINDVFEHISDAIRILREVKLLRLLRHPDIVEIKRIMLPPSKREFK DIFVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTVFWTDYVATRWYRAPEL CGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVVHQLDLITDLLGTPSSETISGVRNDKARKYLTEMRKKQPVPFAQKFLNVDPLALRLLQRLLAFD PKDRLTAEEALADPYFKGLAKVEREPSCQPISKLEFEFERRRVTKEDVRELLYREILEYHPQLLKDYMNGNENTNFLYPSAIGQFRKQFAYLEENSGRSG PVIPPERKHVSLPRSTVHSNTIPPNMQSTSTSFDNRLVTEDTSKNFRVPDASFGNPAKVARPPPRVPSAKQGRVVGSAVPYDNGRNVKDAYDSRIFYRNS VLPPQTVSPHCFFRTNTMVQEKSISEPEKDSQTKQQPPLCNMAAKPSSGMAMDVNAYPYCQPQARVEQLNERIAIDAKLLQAQSQFGPVGAAAVAVAAHR NVGTVQYGLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.001G381300 [exp]	0	1	Pt-TDY1.2
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	2.64	0.6687
AT3G01170			Ribosomal protein L34e superfa...		Potri.004G121900 [exp]	3.74	0.6368
AT1G10350			DNAJ heat shock family protein...		Potri.010G035000 [exp]	8.24	0.5293
AT3G10250			Plant protein 1589 of unknown ...		Potri.006G041200 [exp]	9.94	0.6359
AT3G48880			RNI-like superfamily protein (...		Potri.012G137700 [exp]	10.39	0.5895
AT2G27580			A20/AN1-like zinc finger famil...		Potri.004G184300 [exp]	22.13	0.6007
AT1G55270			Galactose oxidase/kelch repeat...		Potri.003G217700 [exp]	22.13	0.5798
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	24.69	0.5885
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Potri.019G021400 [exp]	25.74	0.5819
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G156000 [exp]	28.19	0.6105

Compare expression of checked genes

Potri.001G381300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.