Plant FIBer expression Database

Potri.001G381400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17030 706 / 0 unknown protein
AT2G47010 613 / 0 unknown protein
AT4G09965 88 / 1e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G381600
[exp]
752 / 0 AT1G17030 698 / 0.0 unknown protein
Potri.004G062000
[exp]
687 / 0 AT1G17030 648 / 0.0 unknown protein
Potri.002G187700
[exp]
607 / 0 AT2G47010 690 / 0.0 unknown protein
Potri.019G076900
[exp]
552 / 0 AT2G47010 587 / 0.0 unknown protein
Potri.001G382000
[exp]
432 / 8e-151 AT1G17030 389 / 1e-133 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009978
[exp]
573 / 0 AT2G47010 647 / 0.0 unknown protein
Lus10007453
[exp]
569 / 0 AT2G47010 653 / 0.0 unknown protein
Lus10000888
[exp]
295 / 5e-95 AT2G47010 320 / 7e-105 unknown protein
Lus10024442
[exp]
190 / 4e-57 AT1G17030 231 / 4e-73 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G381400.2 pacid=42793334 polypeptide=Potri.001G381400.2.p locus=Potri.001G381400 ID=Potri.001G381400.2.v4.1 annot-version=v4.1
ATGGAGAAACTAAGGTTTTGTGTGCTTGCTTTTTCCCTCCTTGGATTTTATGTCATAGCTAGGGAAGAATACATGTCTGCAATTGGAGATCCTGGAATGA
GAAGAGACAGCCTTAGGGTGGCAATTGAGGCATGGAATCAGTGCAATGAGGTTGGCGAGGAAGTTTTTGGCATGGGAAGTCCTAGGATGGCAGATTGTTT
CGATGTAGATAATTCAACATCACAAGTAAAGCTTATTCACATGGTAGACGAAAGAGACAACAAGCTTGGCATTTCAGATGGTTCGTATGGAGGCATTAAT
GCCTCAAATGTAGATGTGTATGCAGCAAGTAAGGAGATATACCTGGGTGATAAATGCCAAGTACAAGACAATCCTAGACCATGGCAGTTTTGGATGATCA
TGGTCAAAAGCGGAAACATGGACACACTAGCAGCTACATGTCCCCAAAATGGCAAGAAATCGACGCCGTTCCCACCGGAACCTCGATTTCCATGCTTCGG
CCTTGGCTGTATGAACATGCCCTTGATGTACCATAACTATACCAGTCTGCAAGGGGATAATGACAGTAACTTGAAGGGAAGTTTCTACGGGACGTGGGAC
TTAAATGTCGATCATGTTTCGAAGGCAGCAGTGAGTAACGGCACTTCTTACTTCAACATCACTTGGGAAAAGGAGATTGGTAAAGGGAGTTGGGTTTTCC
ATCATTTCTTAAAGACATCATCAAATTATCCATGGTTGATGTTATACCTGAGGTCGGACGCCACAGAAGGATACTCCGGCGGATATCATTACGAGACTAG
GGGGATGTCCAAAATAGTTCCAAAATCACCAGATTTCAAAGTGAAGTTCAGACTAGAAGTAAAGCAAGGAGGTGGTCCAAATAGCCAGTTCTACCTCATG
GACATAGGAGGGTGCTGGAAGAACAATGGAAAACCTTGCGATAGGGACGTGACCACAGACGTTACACGATACAGTGAGATGATCATAAACCCTGAAACAA
AATCTTGGTGCAAACCAGAAAGTCTCAAGTTGTGCCCACCTTATCACTTCTTTTCAAATGGAACCAAGATCCACAGAACCGACAAGGAGAACTACCCTTA
TGATGCTTACCACCTCTGGTGTGCTCCAGGCAATGCTGAGCACGTTGAAGAACCATATATTCTATGTGATCCATATAGCAATCCTCAAGCACAAGAGATA
CTGCAAATTCTCCCCCATCCTATCTGGGGGGAATATGGGTACCCCACAAAGAAGGGGGATGGTTGGATAGGGGATCCAAGAACTTGGGAACTCGACGTGG
GCAGGCTGTCTCAGGCACTGTACTTTTACCAGGATCCAGGCACCACGCCTGTGGAGAGACACTGGACATCGATTGACTTGGGAACCGAAATATACATCAG
CAGCGATCAAGTGGCAGAATGGATCGTCAGTGACTTTGACATCGTTGTTCCAAAATTAAGAATGATACACGAGTAA
AA sequence
>Potri.001G381400.2 pacid=42793334 polypeptide=Potri.001G381400.2.p locus=Potri.001G381400 ID=Potri.001G381400.2.v4.1 annot-version=v4.1
MEKLRFCVLAFSLLGFYVIAREEYMSAIGDPGMRRDSLRVAIEAWNQCNEVGEEVFGMGSPRMADCFDVDNSTSQVKLIHMVDERDNKLGISDGSYGGIN
ASNVDVYAASKEIYLGDKCQVQDNPRPWQFWMIMVKSGNMDTLAATCPQNGKKSTPFPPEPRFPCFGLGCMNMPLMYHNYTSLQGDNDSNLKGSFYGTWD
LNVDHVSKAAVSNGTSYFNITWEKEIGKGSWVFHHFLKTSSNYPWLMLYLRSDATEGYSGGYHYETRGMSKIVPKSPDFKVKFRLEVKQGGGPNSQFYLM
DIGGCWKNNGKPCDRDVTTDVTRYSEMIINPETKSWCKPESLKLCPPYHFFSNGTKIHRTDKENYPYDAYHLWCAPGNAEHVEEPYILCDPYSNPQAQEI
LQILPHPIWGEYGYPTKKGDGWIGDPRTWELDVGRLSQALYFYQDPGTTPVERHWTSIDLGTEIYISSDQVAEWIVSDFDIVVPKLRMIHE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17030 unknown protein Potri.001G381400
[exp]
0 1
AT1G07290 GONST2 golgi nucleotide sugar transpo... Potri.009G044000
[exp]
11.18 0.8657
AT3G45140 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGE... Potri.009G022400
[exp]
12.24 0.8765
AT4G01410 Late embryogenesis abundant (L... Potri.014G106100
[exp]
12.80 0.8660
AT3G18400 NAC ANAC058 NAC domain containing protein ... Potri.012G056300
[exp]
21.58 0.8751
AT2G15490 UGT73B4 UDP-glycosyltransferase 73B4 (... Potri.018G008900
[exp]
23.17 0.8686
AT4G23400 PIP1D, PIP1;5 plasma membrane intrinsic prot... Potri.009G128000
[exp]
25.09 0.8118
AT4G12840 Protein of unknown function (D... Potri.014G175800
[exp]
25.88 0.8603
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.016G022000
[exp]
30.98 0.8634
AT2G47540 Pollen Ole e 1 allergen and ex... Potri.002G201900
[exp]
31.43 0.8217
AT5G45960 GDSL-like Lipase/Acylhydrolase... Potri.011G061900
[exp]
31.81 0.8462

Potri.001G381400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.