Plant FIBer expression Database

Potri.001G381600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17030 698 / 0 unknown protein
AT2G47010 607 / 0 unknown protein
AT4G09965 92 / 3e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G381400
[exp]
751 / 0 AT1G17030 706 / 0.0 unknown protein
Potri.004G062000
[exp]
686 / 0 AT1G17030 648 / 0.0 unknown protein
Potri.001G382000
[exp]
610 / 0 AT1G17030 389 / 1e-133 unknown protein
Potri.002G187700
[exp]
597 / 0 AT2G47010 690 / 0.0 unknown protein
Potri.019G076900
[exp]
557 / 0 AT2G47010 587 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009978
[exp]
572 / 0 AT2G47010 647 / 0.0 unknown protein
Lus10007453
[exp]
569 / 0 AT2G47010 653 / 0.0 unknown protein
Lus10000888
[exp]
298 / 2e-96 AT2G47010 320 / 7e-105 unknown protein
Lus10024442
[exp]
194 / 1e-58 AT1G17030 231 / 4e-73 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G381600.1 pacid=42793375 polypeptide=Potri.001G381600.1.p locus=Potri.001G381600 ID=Potri.001G381600.1.v4.1 annot-version=v4.1
ATGACAATGGACACATGGAGATTTTTTCAACTCCTTTTTCTTGCTTGTTTCACTTCTGTAGTTATGGCTAGCAATGATGATTTTATATCGGCTGTTGGTG
ATCCAGGGATGCGAAGGGATGGCCTTAGGGTGGCAATTGAGGCATGGAATCAGTGCAATGAGGTTGGAGAAGAAGCTGTCAACATGGGAAGTCCAAGAAT
GGCAGATTGCTTTGATGTTGACCATTCTACATCATCTGTCAACTTAATTCACAAGGTGAGTGAGGATGAGAACAGGCTGGGCTTATTGAATGATACCTAC
GGAAGAATAAAGGCCAGAAGTTATGACAGGTATGCGCCTAAGAAGCAGCTGTACTTGGGTAACAAATGCCAAGTAAAGGACTATCCGAAACCATGGCAAT
TCTGGATGATCATGCTCAAGAGTGGTAACATGGACACTTTAGCTGCTAGATGCCCCGAAAATGGTAAGAAATCAGAACCCTTTGCACCGGAATCTCGGTT
TCCATGCTTTGGAGAAGGGTGCATGAACATGCCCAAGATTTACCATAATTATACCGGTGTGCATGGAAACAATACCTTGAGAGGAAGTTTTTATGGGACT
TGGGATTTGGATGCTAATATCAAGAGTGGAGTTGTCGACAACAGCACCTCTTATTTCAATGTCACTTGGAAAAAGGAGTTAGGGAAAGGAAGCTGGGTCT
TTCATTTCTACTTGAAGACATCCTCAAAGTATCCATGGTTGATGCTATACCTAAGATCGGATGCCACCAAAGGATTCTCCGGTGGTTATCACTACCAAAC
AAGGGGCATGTCAAAAATAGTGCCAAAGTCACCAAACTTCAAAGTAAAATTCAAGCTAAACATTACACAAGGAGGTGGATCAGGAAGCCAGTTCTACCTG
ATGGACATTGGGAGCTGTTGGAAAAACGATGGCAGTCCTTGCAATGGGGATGTGAGATCAGATGTCACTAGATACAGTGAGATGATCATAAATCCCGGAA
CAGAATCATGGTGCTCACCGGAGAAAGTCGCCGGTTGCCCGCCTTATCACACGTTTCCTAATGGAACAAGAGTTCATAGGACAAACAATGCCAGCTTCCC
CTTCGATGCATATCACATGTACTGTGCTCCTGGCAATGCTCTGCACCTTGAGGAGCCCTATAATTTATGTGACGCATACAGCAATCCTCAACCCCAGGAA
ATATTGCAAATCATTCCTCACCCTGTGTGGGGTGATTATGGGTACCCCGCAAAGAAGGGTGAGGGTTGGATTGGAGATCCAAGAAGTTGGGAACTTGATG
TTGGGAGACTATCTCAATCACTTTACTTCTACCAGGATCCGGGTACAAAACCTGTAGAGAGACACTGGCCATCCATCGACTTGGGAACTGAAATATACAT
AAGCAATGATCAAGTTGCTGAATGGACTGTTAGTGACTTCGACATTCTCGTACCAAAAGATCAGATTCACTGA
AA sequence
>Potri.001G381600.1 pacid=42793375 polypeptide=Potri.001G381600.1.p locus=Potri.001G381600 ID=Potri.001G381600.1.v4.1 annot-version=v4.1
MTMDTWRFFQLLFLACFTSVVMASNDDFISAVGDPGMRRDGLRVAIEAWNQCNEVGEEAVNMGSPRMADCFDVDHSTSSVNLIHKVSEDENRLGLLNDTY
GRIKARSYDRYAPKKQLYLGNKCQVKDYPKPWQFWMIMLKSGNMDTLAARCPENGKKSEPFAPESRFPCFGEGCMNMPKIYHNYTGVHGNNTLRGSFYGT
WDLDANIKSGVVDNSTSYFNVTWKKELGKGSWVFHFYLKTSSKYPWLMLYLRSDATKGFSGGYHYQTRGMSKIVPKSPNFKVKFKLNITQGGGSGSQFYL
MDIGSCWKNDGSPCNGDVRSDVTRYSEMIINPGTESWCSPEKVAGCPPYHTFPNGTRVHRTNNASFPFDAYHMYCAPGNALHLEEPYNLCDAYSNPQPQE
ILQIIPHPVWGDYGYPAKKGEGWIGDPRSWELDVGRLSQSLYFYQDPGTKPVERHWPSIDLGTEIYISNDQVAEWTVSDFDILVPKDQIH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17030 unknown protein Potri.001G381600
[exp]
0 1
AT2G31083 AtCLE5, CLE5, C... CLAVATA3/ESR-RELATED 5 (.1) Potri.011G063750
[exp]
12.60 0.7786
AT2G31083 AtCLE5, CLE5, C... CLAVATA3/ESR-RELATED 5 (.1) Potri.019G090800
[exp]
17.37 0.7573 CLE4.1
AT2G03240 EXS (ERD1/XPR1/SYG1) family pr... Potri.006G035100
[exp]
23.23 0.7047
AT4G35160 O-methyltransferase family pro... Potri.009G139700
[exp]
27.27 0.7452
AT5G36130 Cytochrome P450 superfamily pr... Potri.003G222001
[exp]
27.85 0.7091
AT3G61430 ATPIP1, PIP1;1,... PLASMA MEMBRANE INTRINSIC PROT... Potri.004G167000
[exp]
36.16 0.7132
AT1G66920 Protein kinase superfamily pro... Potri.012G003301
[exp]
42.74 0.6862
Potri.006G017750
[exp]
52.99 0.6977
AT2G47540 Pollen Ole e 1 allergen and ex... Potri.014G126250
[exp]
53.66 0.7074
AT2G04100 MATE efflux family protein (.1... Potri.004G094800
[exp]
55.69 0.7049

Potri.001G381600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.