Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68470 528 / 0 Exostosin family protein (.1) AT2G20370 347 / 5e-113 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 340 / 4e-109 Exostosin family protein (.1) AT2G32750 332 / 1e-108 Exostosin family protein (.1) AT4G13990 321 / 2e-104 Exostosin family protein (.1) AT2G32740 307 / 1e-99 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT1G63450 313 / 2e-99 RHS8 root hair specific 8 (.1) AT5G62220 306 / 1e-98 ATGT18 glycosyltransferase 18 (.1) AT5G41250 302 / 1e-96 Exostosin family protein (.1) AT2G31990 297 / 2e-95 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382200 [exp] 997 / 0 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 355 / 1e-116 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 337 / 6e-109 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 322 / 2e-104 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 306 / 1e-98 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 293 / 7e-93 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 289 / 5e-92 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 280 / 3e-88 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 231 / 2e-70 AT4G22580 593 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013701 [exp] 483 / 2e-168 AT1G68470 466 / 4e-162 Exostosin family protein (.1) Lus10005566 [exp] 471 / 2e-163 AT1G68470 457 / 1e-158 Exostosin family protein (.1) Lus10013700 [exp] 413 / 1e-136 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10022862 [exp] 354 / 7e-116 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 350 / 2e-114 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 339 / 4e-111 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 327 / 1e-106 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 325 / 9e-106 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10001578 [exp] 322 / 1e-103 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 319 / 1e-103 AT2G32750 497 / 7e-173 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.001G381900.1 pacid=42793016 polypeptide=Potri.001G381900.1.p locus=Potri.001G381900 ID=Potri.001G381900.1.v4.1 annot-version=v4.1 ATGGTTGTCAAGAAAAAATCTATATCGTCTGCATCTCCATGGACGGAGAAAGGGAAGTACTCTAAAACCAACGAAATACATTACTCGTTTCTTAAACCAC AGTTGAGACACGCTCTACTACTCTGTTTCTTGCTTTCTGTTTGGTTTGTTATTCTAAGATGTTTTCTCTTGTCCTCCTCCACGAGCGAAAACAACATCGA GAAACTAAACGTAGATGAAAAGGCGCCCAAGACAACATCGAAATCATCTGCGATATCCAAGTGTGAAGGAGGAATGTCAGTGTATTTATATGACATGCCC GCTGAGTTCAACAAGGGTTTACTTAAAGATTGCAGCCATCTAAATCCTTACACTGACATGTGTCCTCATGTGGCAAATCGCGGATTAGGCCAACCACTCT CCTACATGGCAGAGTCCGCCGTCGCCACCACATGGTTTGCCACCCACCAGTTCATTGCGGAGATGATTTTTCACGCTCGTATGGAGAACCATCCATGTCG TGTTTTGGATCCTATAAATGCCAAGCTATTCTACGTGCCATTCTATGGTGGACTCGATGCCTCAAGCAAGTTCCACGATGCAAATCTCACGGCACGCGAT GAACTAGCCGTCCGATTAGCAGATTATCTCCGATCAAAACCATGGTGGGAGAGGCATCACGGTAAGGACCATTTCTTAGTCCTAGGAAGGACCGCATGGG ATTTCTTGAGAAGAAATAACAACTTTGGAAACTCTCTCCTAAATCTGCCAGACGTGCAAAACATGTCGGTGCTGACTGTAGAGCGAAACCCTTGGGATCG AGTCCACAACCAACATGGCATCCCTTACCCTTCCTATTTCCACCCGTACACGTCACACGAGATGATGACGTGGCAGAACAAGATGAGACAATCAAGTAGG CCCCACCTCTTCTCCTTTATAGGGGGGCCACGTAGAGGAGTTGAGAAAGCTGCTGTAAGGGACGAGTTAATAAGGCAGTGCAGCGAGTCAGGTCGATGCA AGCTTCTAAAATGTGGGAAAGGACCCAGTAAATGCCATTACCCAATTGAGGTACTTAAGGTGATGTCTCAGTCCCAGTTTTGCTTGCAAGCTCCCGGTGA CTCGTTCACTCGGAGGTCAACTTTTGACTCAGTGTTGGCAGGTTGCATACCTGTGTTTTTCTCACCTCACACTGTGTATACTCAGTATGAGTGGTTTTTT CCAGCTGGGGATGCGAGAGAGTATTCAGTTTACATAGATGAAAATGCTTTGAAGACGGGAAATGGAAGCAAAAGGGTAGTTAGCATTGAGGAAGAGCTTT TCAAGATTGAGAGAGAGCAGGTGGAGAGAATGAGAAGCGCAGTAATAAATTTGATGCCGAGACTCACCTATGCACACCCTAATGCGACTGATCTAGGGTT TCAAGATGCTGTGGATGTTGCCCTTGAGGCATTGTGGGCCAAGCGTTTAAAGTTGAACGTCTAA
AA sequence Show only first row Show all	>Potri.001G381900.1 pacid=42793016 polypeptide=Potri.001G381900.1.p locus=Potri.001G381900 ID=Potri.001G381900.1.v4.1 annot-version=v4.1 MVVKKKSISSASPWTEKGKYSKTNEIHYSFLKPQLRHALLLCFLLSVWFVILRCFLLSSSTSENNIEKLNVDEKAPKTTSKSSAISKCEGGMSVYLYDMP AEFNKGLLKDCSHLNPYTDMCPHVANRGLGQPLSYMAESAVATTWFATHQFIAEMIFHARMENHPCRVLDPINAKLFYVPFYGGLDASSKFHDANLTARD ELAVRLADYLRSKPWWERHHGKDHFLVLGRTAWDFLRRNNNFGNSLLNLPDVQNMSVLTVERNPWDRVHNQHGIPYPSYFHPYTSHEMMTWQNKMRQSSR PHLFSFIGGPRRGVEKAAVRDELIRQCSESGRCKLLKCGKGPSKCHYPIEVLKVMSQSQFCLQAPGDSFTRRSTFDSVLAGCIPVFFSPHTVYTQYEWFF PAGDAREYSVYIDENALKTGNGSKRVVSIEEELFKIEREQVERMRSAVINLMPRLTYAHPNATDLGFQDAVDVALEALWAKRLKLNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68470			Exostosin family protein (.1)		Potri.001G381900 [exp]	0	1
AT1G52330			Late embryogenesis abundant (L...		Potri.001G180600 [exp]	1.00	0.9640
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	2.44	0.9595
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	2.44	0.9633
AT2G03360			Glycosyltransferase family 61 ...		Potri.008G092700 [exp]	2.82	0.9269
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	3.16	0.9476
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	3.46	0.9331	COMTL3,Pt-GSI.2
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	3.46	0.9483
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	5.29	0.9289	Pt-ATNAC2.2
AT5G62865			unknown protein		Potri.015G073800 [exp]	6.24	0.9004
AT1G27620			HXXXD-type acyl-transferase fa...		Potri.005G230900 [exp]	7.48	0.8879

Compare expression of checked genes

Potri.001G381900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.