Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17030 388 / 2e-133 unknown protein AT2G47010 327 / 1e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381600 [exp] 610 / 0 AT1G17030 698 / 0.0 unknown protein Potri.001G381400 [exp] 432 / 6e-151 AT1G17030 706 / 0.0 unknown protein Potri.004G062000 [exp] 375 / 3e-128 AT1G17030 648 / 0.0 unknown protein Potri.002G187700 [exp] 327 / 1e-109 AT2G47010 690 / 0.0 unknown protein Potri.019G076900 [exp] 291 / 6e-95 AT2G47010 587 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007453 [exp] 313 / 7e-104 AT2G47010 653 / 0.0 unknown protein Lus10009978 [exp] 307 / 3e-101 AT2G47010 647 / 0.0 unknown protein Lus10000888 [exp] 88 / 4e-19 AT2G47010 320 / 7e-105 unknown protein Lus10024442 [exp] 69 / 3e-13 AT1G17030 231 / 4e-73 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G382000.2 pacid=42790682 polypeptide=Potri.001G382000.2.p locus=Potri.001G382000 ID=Potri.001G382000.2.v4.1 annot-version=v4.1 ATGACAATGGACACATTGAGATTTTTTCAACTCCTTTTTCTTGCTTGTTTCACTTCTGTAGTTATGGCTTGCAATGATGATTTTATATCGGCTGTTGGTG ATCCAGGGATGCGAAGGGATGGCCTTAGGGTGGCAATTGAGGCATGGAATCAGTGCAATGAGGTTGGAGAAGAAGCTGTCAACATGGGAAGTCCAAGAAT GGCAGATTGCTTTGATGTTGACCATTCTACATCATCTGTCAACTTAATTCACAAGGTGAGTGAGGATGAGAACAGGCTGGGCTTATTGAATGATACCTAC GGAAGAATAAAGGCCAGAAGTTATGACAGGTATGCGCCTAAGAAGCAGCTGTACTTGGGTAACAAATGCCAAGTAAAGGACTATCCGAAACCATGGCAAT TCTGGATGATCATGCTCAAGAGTGGTAACATGGACACTTTAGCTGCTAGATGCCCCGAAAATGGCAAGAAATCAGAGCCCTTTGCACCGGAATCTCGTTT TCCATGCTTTGGAGAAGGGTGGATGAACATGCCCAAGATGTACCATAATTATACCGGTGTGCATGGAAACAATACCTTGGATGCTAATGTCAAGAGTGGA GTTGTCGACAACAGCACCTCTTATTTCAATGTCACTTGGCAAAAGGAGTTAGGGAAAGGAAGCTGGGTCTTTCATTTCTACTTGAAAACATCCTCAAAGT ATCCATGGTTGATGCTATACCTAAGATCGGATGCCACCAAAGGATTCTCCGGTGGTTATCACTACCAAACAAGGGGCATGTCAAAAATAGTGCCAAAGTC ACAAAACTTTAAAGTAAAATTCAAGCTAAACATTACACAAGGAGGTGGACCAGGAAGCCAGTTCTACCTGATGGACATTGGGAGCTGTTGGAAAAACGAT GGCAGTACTCTAAATGGCAATCAAACTTTAATGTTTTCATATATCTGA
AA sequence Show only first row Show all	>Potri.001G382000.2 pacid=42790682 polypeptide=Potri.001G382000.2.p locus=Potri.001G382000 ID=Potri.001G382000.2.v4.1 annot-version=v4.1 MTMDTLRFFQLLFLACFTSVVMACNDDFISAVGDPGMRRDGLRVAIEAWNQCNEVGEEAVNMGSPRMADCFDVDHSTSSVNLIHKVSEDENRLGLLNDTY GRIKARSYDRYAPKKQLYLGNKCQVKDYPKPWQFWMIMLKSGNMDTLAARCPENGKKSEPFAPESRFPCFGEGWMNMPKMYHNYTGVHGNNTLDANVKSG VVDNSTSYFNVTWQKELGKGSWVFHFYLKTSSKYPWLMLYLRSDATKGFSGGYHYQTRGMSKIVPKSQNFKVKFKLNITQGGGPGSQFYLMDIGSCWKND GSTLNGNQTLMFSYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17030			unknown protein		Potri.001G382000 [exp]	0	1
					Potri.005G243501 [exp]	1.00	1.0000
					Potri.015G088350 [exp]	1.73	0.9401
AT4G16295		SPH1	S-protein homologue 1 (.1)		Potri.002G252500 [exp]	4.24	0.8986
					Potri.008G111650 [exp]	5.65	0.9140
					Potri.003G026712 [exp]	7.48	0.9153
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120400 [exp]	20.29	0.8638	ATRPABC16.1
					Potri.014G057901 [exp]	26.15	0.8375
AT5G39400		ATPTEN1	Phosphatase and TENsin homolog...		Potri.017G089700 [exp]	31.36	0.8195
					Potri.001G448600 [exp]	36.24	0.8450
AT4G23490			Protein of unknown function (D...		Potri.012G107800 [exp]	36.57	0.9180

Compare expression of checked genes

Potri.001G382000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.