Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68470 529 / 0 Exostosin family protein (.1) AT2G20370 347 / 5e-113 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 343 / 2e-110 Exostosin family protein (.1) AT2G32750 335 / 5e-110 Exostosin family protein (.1) AT4G13990 316 / 2e-102 Exostosin family protein (.1) AT2G32740 312 / 1e-101 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT5G62220 306 / 2e-98 ATGT18 glycosyltransferase 18 (.1) AT1G63450 308 / 8e-98 RHS8 root hair specific 8 (.1) AT2G31990 300 / 1e-96 Exostosin family protein (.1) AT5G41250 301 / 5e-96 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381900 [exp] 969 / 0 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.002G256200 [exp] 351 / 6e-115 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 338 / 3e-109 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 325 / 3e-105 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 308 / 6e-99 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 289 / 4e-91 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 285 / 2e-90 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 280 / 2e-88 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 232 / 8e-71 AT4G22580 593 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013701 [exp] 489 / 6e-171 AT1G68470 466 / 4e-162 Exostosin family protein (.1) Lus10005566 [exp] 471 / 1e-163 AT1G68470 457 / 1e-158 Exostosin family protein (.1) Lus10013700 [exp] 418 / 3e-138 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10022862 [exp] 347 / 2e-113 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10024961 [exp] 346 / 8e-113 AT2G20370 959 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 338 / 1e-110 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 329 / 1e-107 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10007426 [exp] 325 / 4e-106 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10001578 [exp] 327 / 2e-105 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10010677 [exp] 320 / 6e-104 AT2G32750 497 / 7e-173 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.001G382200.2 pacid=42788348 polypeptide=Potri.001G382200.2.p locus=Potri.001G382200 ID=Potri.001G382200.2.v4.1 annot-version=v4.1 ATGGTTGTCAAGAAAAAATCTATATCATCTGCATCTCCATGGTCGACGGAGAAAGGGAAGTACTCTAAAACCAACGAAATACATTACTCATTCCTTAAAC CACAGTTGAGACACGCTCTACTACTCTGTTTCTTGCTTTCTGTTTGGTTTGTTATTCTAAGATGTTTTCTCTCGTCCTCCTCCACGAGCGAAAACAACAT GGAGAAGCAAAACGTAGATGAAAAGGCCAAGACAACATCGAAATCATCTGCGATATCCAAGTGTGAAGGAGGAATGTCAGTGTATTTATATGACATGCCC GCTGAGTTCAACAAGGGTTTACTTAAAGATTGCAGCCATCTAAATGCTTACACTGACATGTGTCCTCATGTGGCAAATCGCGGATTAGGCCAACCACTCT CCTACATGGTAGAGTCCGCCGTCGCCACCACATGGTTTGCCACCCACCAGTTCATTGCGGAGATGATTTTTCACGCTCGTATGGAGAACCATCCATGTCG TGTTTTGGATCCTATAAATGCCAAGCTATTCTACGTGCCATTCTATGGTGGACTCGATGCCTCAAGCAAGTTCCACGATGCCAATCTCACGGCACGCGAT GAACTAGCCGTCCGATTAGCAGATTATCTCCGATCAAAACCATGGTGGGAGAGGCATCACGGTAAGGACCATTTCTTAGTCCTAGGAAGGACCGCATGGG ATTTCTTGAGAAGAAATAACGACTTTGGAAACTCTCTCCTAAATCTGCCAGACGTGCAAAACATGTCGGTGCTGACTGTAGAGCGAAACCCTTGGGATCG AGTCCACAACCAACATGGCATCCCTTACCCTTCCTATTTCCACCCGTACACGTCACACGAGATGATGACGTGGCAGAACAAGATGAGACAATCAAGTAGG CCCCACCTCTTCTCCTTTATAGGGGGGCCACGTAGAGGAGTTGAGAAAGCTGCTGTAAGGGACGAGTTAATAAGGCAGTGCAGCGAGTCAGGTCGCTGCA AGCTTCTAAAATGTGGGAAAGGACCCAGTAAATGCCATGACCCAATTGAGGTACTTAAGGTGATGTCTCAGTCCCAGTTTTGCTTGCAAGCTCCCGGTGA CTCGTTCACTCGGAGGTCAACTTTTGACTCAGTGTTGGCAGGTTGCATACCTGTGTTTTTCTCACCTCACACTGTGTATACTCAGTATGAGTGGTTTTTT CCAGCTGGGGATGCGAGAGAGTATTCAGTTTACATAGATGAAAATGCTTTGAAGACGGGAAATGGAAGCAAAAGGGTAGTTAGCATTGAGGAAGAGCTTT TCAAGATTGAGAGAGAGAAGGTGGAGAGAATGAGAAGCGCAGTAATAAATTTGATGCCGAGACTCACCTATGCACACCCTAATGCGACTGATCTAGGGTT TCAAGATGCTGTGGATGTTGCCCTTGAGGCATTGTGGGCCAAGCGTTTGAAGTTGAACGTCTAA
AA sequence Show only first row Show all	>Potri.001G382200.2 pacid=42788348 polypeptide=Potri.001G382200.2.p locus=Potri.001G382200 ID=Potri.001G382200.2.v4.1 annot-version=v4.1 MVVKKKSISSASPWSTEKGKYSKTNEIHYSFLKPQLRHALLLCFLLSVWFVILRCFLSSSSTSENNMEKQNVDEKAKTTSKSSAISKCEGGMSVYLYDMP AEFNKGLLKDCSHLNAYTDMCPHVANRGLGQPLSYMVESAVATTWFATHQFIAEMIFHARMENHPCRVLDPINAKLFYVPFYGGLDASSKFHDANLTARD ELAVRLADYLRSKPWWERHHGKDHFLVLGRTAWDFLRRNNDFGNSLLNLPDVQNMSVLTVERNPWDRVHNQHGIPYPSYFHPYTSHEMMTWQNKMRQSSR PHLFSFIGGPRRGVEKAAVRDELIRQCSESGRCKLLKCGKGPSKCHDPIEVLKVMSQSQFCLQAPGDSFTRRSTFDSVLAGCIPVFFSPHTVYTQYEWFF PAGDAREYSVYIDENALKTGNGSKRVVSIEEELFKIEREKVERMRSAVINLMPRLTYAHPNATDLGFQDAVDVALEALWAKRLKLNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68470			Exostosin family protein (.1)		Potri.001G382200 [exp]	0	1
AT4G00210	AS2	LBD31	LOB domain-containing protein ...		Potri.002G148900 [exp]	1.41	0.9485
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G129300 [exp]	2.23	0.9244
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	3.00	0.9431
AT1G68470			Exostosin family protein (.1)		Potri.001G381900 [exp]	3.16	0.9476
					Potri.005G162201 [exp]	3.46	0.9158
AT4G04970		ATGSL01, ATGSL1	GLUCAN SYNTHASE LIKE-1, GLUCAN...		Potri.011G052400 [exp]	3.74	0.8703
AT5G18980			ARM repeat superfamily protein...		Potri.010G029300 [exp]	4.47	0.9418
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038000 [exp]	6.24	0.8742
AT1G17430			alpha/beta-Hydrolases superfam...		Potri.001G168600 [exp]	6.32	0.9019
AT1G52330			Late embryogenesis abundant (L...		Potri.001G180600 [exp]	7.00	0.9054

Compare expression of checked genes

Potri.001G382200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.