Plant FIBer expression Database

Potri.001G382300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G382300.2 pacid=42789715 polypeptide=Potri.001G382300.2.p locus=Potri.001G382300 ID=Potri.001G382300.2.v4.1 annot-version=v4.1
ATGGAACAGCCCTTCTCTCCTCCTTCATACAGTTGCAGCAACCCTTTCCACATCGTCAAATCCGGCAGCACCAACTCCCTTCGTCGCCCCGCGACCCTCT
CTCCACAAACAAATACGCCACTGACACCAACTTGTGCAACAATCCAGAACAACCACCGAAACACTTACACATCGAAACTGATCTGCCTTTTTAACCCTAA
CCAACAACCACATCAACCACCAAAAATCAGCCCAAATCCCAATCATAGACACGAAAAAAAATTCATTTTTTGTGTTTTCTTAAAGATCCGTGACGGCGAG
TGTGATGCACGCGCCAAGGAATCCACAAACGCGCGCATGAATCCACAAATCCTAGTCACGTTCCAGCGCATGTCTATCAGGCGCCACCGCTTCCTAGTTC
ATTTCCAAGGTCTGTAG
AA sequence
>Potri.001G382300.2 pacid=42789715 polypeptide=Potri.001G382300.2.p locus=Potri.001G382300 ID=Potri.001G382300.2.v4.1 annot-version=v4.1
MEQPFSPPSYSCSNPFHIVKSGSTNSLRRPATLSPQTNTPLTPTCATIQNNHRNTYTSKLICLFNPNQQPHQPPKISPNPNHRHEKKFIFCVFLKIRDGE
CDARAKESTNARMNPQILVTFQRMSIRRHRFLVHFQGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G382300
[exp]
0 1
AT1G20160 ATSBT5.2 Subtilisin-like serine endopep... Potri.002G018600
[exp]
3.74 0.8286 Pt-SSTP.2
AT1G47890 AtRLP7 receptor like protein 7 (.1) Potri.001G437700
[exp]
4.47 0.8227
AT1G03055 unknown protein Potri.005G216400
[exp]
4.89 0.8183
AT1G08170 Histone superfamily protein (.... Potri.001G212200
[exp]
5.91 0.8172
AT3G10030 Trihelix aspartate/glutamate/uridylate ... Potri.008G027000
[exp]
7.48 0.7584
AT1G05710 bHLH bHLH153 basic helix-loop-helix (bHLH) ... Potri.013G126800
[exp]
11.00 0.8029
AT1G30220 ATINT2 ARABIDOPSIS THALIANA INOSITOL ... Potri.004G133420
[exp]
11.31 0.7872
Potri.008G206100
[exp]
15.16 0.8107
AT2G38400 AGT3 alanine:glyoxylate aminotransf... Potri.016G132200
[exp]
20.85 0.7879 AGT3.1
AT4G22990 Major Facilitator Superfamily ... Potri.014G078000
[exp]
21.90 0.7690

Potri.001G382300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.