Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SRG1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 446 / 1e-157 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G17010 434 / 5e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 422 / 2e-148 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 420 / 2e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 284 / 8e-94 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 251 / 6e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 242 / 8e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 238 / 1e-75 ATJRG21 jasmonate-regulated gene 21 (.1) AT2G38240 237 / 1e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G381700 [exp] 520 / 0 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 455 / 5e-161 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 437 / 3e-154 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.001G355200 [exp] 339 / 2e-115 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G022800 [exp] 307 / 7e-103 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G023600 [exp] 298 / 4e-99 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 277 / 4e-91 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G200900 [exp] 254 / 6e-82 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 246 / 4e-79 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026173 [exp] 466 / 3e-165 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 459 / 8e-163 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 442 / 9e-156 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011980 [exp] 407 / 5e-142 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10015252 [exp] 405 / 3e-141 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 402 / 3e-140 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10011981 [exp] 401 / 8e-140 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011985 [exp] 395 / 4e-137 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10030995 [exp] 352 / 2e-120 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030934 [exp] 345 / 1e-117 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G382400.1 pacid=42792850 polypeptide=Potri.001G382400.1.p locus=Potri.001G382400 ID=Potri.001G382400.1.v4.1 annot-version=v4.1 ATGGAATCAAAAGTTGTTCAGTTCGGAAGCTCTCTTATTGTGCCCTGCGTCCAGGAATTGGCCAAGGTAAACACGGCAGCCATCCCACCAAGATATATCC GTCCTGATCAAGACCAGCCCACGATCATTCCCAGCTGTGCTTCGGTTAATGAGATCCCGGTTGTTGATATGCAGAGGTTACTAGATCAAGAATCAATGGA CTCTGAACTGGCCAAGCTCCATCTTGCTTGCAGAGACTGGGGTTTCTTTCAGTTGGTAAACCATGAAGTGAGCGCTTCGTTGTTGGAGAAAGTAAAGACT GATGTCCAGGACTTCTTTAACCTGCCAATGGAAGAGAAGAAGCTCTTTTGGCAGTATCCAGGAGAAGTAGAGGGCTTCGGACAAGCATTTGTCGTGTCCG AGGAGCAAAAGCTTGACTGGGGTGACCTTTTCTTCATGGTCACCCAGCCAGTTCATGCAAGGAAACCCCACTTGTTTCCAAAGCTGCCTCTTCCTTTCAG AGACACCGTGGAGGCATTTTCATTGGAATTGAAAAACCTAGGTATTACAATCCTCGGAAAGATGGCTAAAGCACTAAAGATAGAGGCAGAGGAAGTAGAA GAGCTCTTTGGAAATGGGTTTCAGTCGATGAGGATGAATTATTACCCTCCATGTCCTCAACCTGATAAGGTTATTGGCCTTACTCCTCATTCTGATGCTG TAGGTCTCACTATACTCCTGCAAGTCAACGAAGTGGAAGGTCTCCAGGTAAAGAAGGATGGGAAATGGGTTCCTGTCAAGCCCCTCCCAAATGCCTTCAT TTTCAACGTTGGAGATATTTTGGAGATCATAACGAACGGGACATACCGTAGCATTGAGCATCGGGCAACAGTGAATTCTGAGAAAGAAAGGCTCTCAATT GCAACATTTTTGTCCCCAAACTATGACGGCGTAATTGGACCAGCATCCAGTTTAGTCACTGAACAGACTCCAGCAATGTTTAAGAGTACAACAACTGAAG AGTATTTCAAGGGCCTCTTTGCTCGCGAGCTTCATGAAAAATCATACCTTGATGTTATGAGAATATGA
AA sequence Show only first row Show all	>Potri.001G382400.1 pacid=42792850 polypeptide=Potri.001G382400.1.p locus=Potri.001G382400 ID=Potri.001G382400.1.v4.1 annot-version=v4.1 MESKVVQFGSSLIVPCVQELAKVNTAAIPPRYIRPDQDQPTIIPSCASVNEIPVVDMQRLLDQESMDSELAKLHLACRDWGFFQLVNHEVSASLLEKVKT DVQDFFNLPMEEKKLFWQYPGEVEGFGQAFVVSEEQKLDWGDLFFMVTQPVHARKPHLFPKLPLPFRDTVEAFSLELKNLGITILGKMAKALKIEAEEVE ELFGNGFQSMRMNYYPPCPQPDKVIGLTPHSDAVGLTILLQVNEVEGLQVKKDGKWVPVKPLPNAFIFNVGDILEIITNGTYRSIEHRATVNSEKERLSI ATFLSPNYDGVIGPASSLVTEQTPAMFKSTTTEEYFKGLFARELHEKSYLDVMRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G382400 [exp]	0	1	Pt-SRG1.2
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Potri.013G019600 [exp]	2.82	0.9416
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G431700 [exp]	3.16	0.9527
AT4G32340			Tetratricopeptide repeat (TPR)...		Potri.006G254300 [exp]	7.00	0.8779
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Potri.014G180500 [exp]	8.12	0.9230
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G436800 [exp]	9.74	0.9412
AT3G24255			RNA-directed DNA polymerase (r...		Potri.004G185050 [exp]	10.24	0.9087
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.014G118200 [exp]	16.12	0.8962
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	16.49	0.9127
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128000 [exp]	17.23	0.8952
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	19.79	0.8462

Compare expression of checked genes

Potri.001G382400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.