Plant FIBer expression Database

Potri.001G382700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14750 296 / 1e-99 unknown protein
AT1G67170 132 / 7e-36 unknown protein
AT1G55170 127 / 1e-34 unknown protein
AT2G30120 122 / 2e-32 unknown protein
AT5G61920 81 / 7e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G281400
[exp]
179 / 1e-54 AT2G30120 161 / 4e-48 unknown protein
Potri.009G076700
[exp]
166 / 5e-49 AT3G14750 173 / 8e-52 unknown protein
Potri.003G037900
[exp]
145 / 1e-41 AT1G55170 259 / 2e-86 unknown protein
Potri.017G109700
[exp]
145 / 7e-40 AT1G67170 282 / 3e-91 unknown protein
Potri.006G178100
[exp]
125 / 1e-33 AT5G61920 155 / 3e-46 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013698
[exp]
355 / 3e-123 AT3G14750 298 / 3e-100 unknown protein
Lus10005563
[exp]
350 / 5e-121 AT3G14750 288 / 2e-96 unknown protein
Lus10038143
[exp]
337 / 7e-116 AT3G14750 275 / 1e-91 unknown protein
Lus10026389
[exp]
138 / 6e-39 AT2G30120 159 / 2e-47 unknown protein
Lus10035371
[exp]
137 / 1e-38 AT1G67170 284 / 2e-95 unknown protein
Lus10030976
[exp]
140 / 2e-38 AT1G67170 294 / 1e-96 unknown protein
Lus10015629
[exp]
134 / 4e-37 AT1G55170 236 / 2e-77 unknown protein
Lus10042267
[exp]
134 / 1e-36 AT2G30120 157 / 2e-45 unknown protein
Lus10037647
[exp]
130 / 2e-35 AT1G55170 233 / 6e-76 unknown protein
Lus10015628
[exp]
127 / 9e-35 AT1G55170 211 / 3e-68 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G382700.2 pacid=42788036 polypeptide=Potri.001G382700.2.p locus=Potri.001G382700 ID=Potri.001G382700.2.v4.1 annot-version=v4.1
ATGTCTGGGAGAAATCGAGGACCGCCTCTGCCCATGAAAGGTGGACCTCACCCTTCACTACCACCGGCTGCCATACATGAGGCTCGCTTTGGCAGGGGAC
TCGGACCATTGCCCCCTCATCCAGGTTTATTAGAGGATATGAGAGAACCCCAGTTTGGGATGGACCCCAGGCGCCTTCCTCCTCATCACGTTATGTTTGA
GGATCGTCTTGCAGTCCAGCACCAAGATATTCAAGTTTTATTAGCTGACAACCAGCGCCTAGCTGCGACCCATGTTGCATTAAAGCAGGAATTGGAAGCT
GCACAGCATGAGTTGCATAGGATGGCACATTTCGGGGATGCATTTCATGCTGAGAAGGATGTTCAGATGAGGGAGTTGCATGAGAAGTCTCTGAGGATGA
AGATGGATCTTCGTGGGGTGGAAGCTATGCGGAATGAGCTTCATCATGTGCGTTCTGATATTAAAGAACTTACTGATGCAAAGCAGGAGCTTACGGGTCG
GATGCAGGCGATGAGTCAAGATTTGGCTAGGTATAATGTAGATTTGCAACAAGTGCCATCTGTGAAGGCTGAAATTGAGAATATGAAGCAGGAACTGCAG
CGTGCGCGAGCTGCCATCGAGTATGAGAAGAAAGGCTATGCGGAGAATTACGAGCATGGTGTGGTGATGGAGAAAAAACTGGTTGGCATGGCTCGGGAGA
TGGAGAAGCTTCGGGCAGAGATTGCTAATGCAGAGAAGAGAGCTCGTGCTGCCGCTGCTATAGGAAATCCAGCTGCAGCTTATAATGCAAATTACGGAAA
TCCGGAAACTGGATACACAGCAAATCCATATCAGGCTGTCTATGGCATGAATCCTGTGCAAGCTAATGCTGAAAGTTTTCCGCAGTATGGAGCTGGACCT
GGTTCCTGGGGTGCATATGATATGCAGCGAGCTCAAGGACCCAGATAG
AA sequence
>Potri.001G382700.2 pacid=42788036 polypeptide=Potri.001G382700.2.p locus=Potri.001G382700 ID=Potri.001G382700.2.v4.1 annot-version=v4.1
MSGRNRGPPLPMKGGPHPSLPPAAIHEARFGRGLGPLPPHPGLLEDMREPQFGMDPRRLPPHHVMFEDRLAVQHQDIQVLLADNQRLAATHVALKQELEA
AQHELHRMAHFGDAFHAEKDVQMRELHEKSLRMKMDLRGVEAMRNELHHVRSDIKELTDAKQELTGRMQAMSQDLARYNVDLQQVPSVKAEIENMKQELQ
RARAAIEYEKKGYAENYEHGVVMEKKLVGMAREMEKLRAEIANAEKRARAAAAIGNPAAAYNANYGNPETGYTANPYQAVYGMNPVQANAESFPQYGAGP
GSWGAYDMQRAQGPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14750 unknown protein Potri.001G382700
[exp]
0 1
AT2G30110 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-... Potri.009G075700
[exp]
2.82 0.7345
AT1G32900 GBSS1 granule bound starch synthase ... Potri.011G152200
[exp]
3.60 0.7203 Pt-GBSSI.2
AT4G19950 unknown protein Potri.007G105600
[exp]
7.07 0.7726 Pt-ORF.7
AT4G10570 UBP9 ubiquitin-specific protease 9 ... Potri.011G152500
[exp]
7.48 0.7520
AT3G18860 transducin family protein / WD... Potri.009G112184
[exp]
15.19 0.7357
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126800
[exp]
18.70 0.7411
AT5G10780 unknown protein Potri.018G016800
[exp]
23.06 0.6433
AT2G26800 Aldolase superfamily protein (... Potri.009G068600
[exp]
37.22 0.6838
AT2G34690 ACD11 ACCELERATED CELL DEATH 11, Gly... Potri.016G055300
[exp]
82.84 0.6339
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126700
[exp]
111.35 0.6891

Potri.001G382700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.