Plant FIBer expression Database

Potri.001G382800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14760 109 / 3e-30 unknown protein
AT1G71740 44 / 1e-05 unknown protein
AT1G49000 43 / 2e-05 unknown protein
AT3G18560 40 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G103500
[exp]
286 / 1e-99 AT3G14760 121 / 6e-35 unknown protein
Potri.010G130600
[exp]
45 / 4e-06 AT1G49000 77 / 2e-18 unknown protein
Potri.005G198200
[exp]
41 / 8e-05 AT1G71740 112 / 5e-33 unknown protein
Potri.017G128700
[exp]
40 / 0.0002 AT3G18560 48 / 3e-07 unknown protein
Potri.012G059500
[exp]
39 / 0.0006 AT1G49000 111 / 1e-31 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038145
[exp]
76 / 7e-17 AT3G14760 70 / 1e-14 unknown protein
Lus10042496
[exp]
71 / 7e-15 AT3G14760 65 / 1e-12 unknown protein
Lus10034266
[exp]
46 / 4e-06 AT1G71740 53 / 4e-09 unknown protein
Lus10041497
[exp]
45 / 5e-06 AT1G71740 51 / 2e-08 unknown protein
Lus10042773
[exp]
44 / 6e-06 AT1G71740 81 / 8e-21 unknown protein
Lus10029742
[exp]
43 / 2e-05 AT1G71740 82 / 5e-21 unknown protein
Lus10032453
[exp]
40 / 0.0004 AT1G49000 70 / 1e-14 unknown protein
Lus10042953
[exp]
40 / 0.0007 AT1G49000 67 / 8e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G382800.1 pacid=42789614 polypeptide=Potri.001G382800.1.p locus=Potri.001G382800 ID=Potri.001G382800.1.v4.1 annot-version=v4.1
ATGGAAGCACTGTGGAATTTGGAGGACAAATGGAAGCTGACGACCCAAGAAGCAGTCCTCTTATTTGTATGCTCTGCCTTCGCAGTCATTGCGCTCTGCA
CTGCAACAATGCTTAAGAGGAAGGCCCAGAGAAAGCCAAGATTAGTGAACCAAGACCCAATTAGCGCAGGTACCTCAATAAGATGGTCTGAGCCTGACCC
TGGTTCTAATGATTGGATCACAATAAAGACGGTGTTGATGGAGTCAATGAGGTGGAGTGAAGCAAGCAAATGGGAGGAGGGAGGTAGTGGGAGTGAGAGT
GGGAGTGGGAGGCGGGGAGAGATGCTACGACCACCACCACTTCTCGGGCTAGAGAGGTGCGACTCAAGTATTGGGTGGCAAAGCCAGAACTCTTTGTCAC
CTGCAGTGTGGCAAAGGCCTATCCTCATGGGAGAGAAATGTGAGCTTCCAAGGCATAGTGGGCTTATTCTCTATGATGAAAGAGGTCGGCTACTTGATCA
TTCTCTCACATCATCTCGTAAAGAAAATATTCATGAGGAAAAACCAGCAGCTGTTCTGAGAACTTCTAAGGTTGATTTGCTATAG
AA sequence
>Potri.001G382800.1 pacid=42789614 polypeptide=Potri.001G382800.1.p locus=Potri.001G382800 ID=Potri.001G382800.1.v4.1 annot-version=v4.1
MEALWNLEDKWKLTTQEAVLLFVCSAFAVIALCTATMLKRKAQRKPRLVNQDPISAGTSIRWSEPDPGSNDWITIKTVLMESMRWSEASKWEEGGSGSES
GSGRRGEMLRPPPLLGLERCDSSIGWQSQNSLSPAVWQRPILMGEKCELPRHSGLILYDERGRLLDHSLTSSRKENIHEEKPAAVLRTSKVDLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14760 unknown protein Potri.001G382800
[exp]
0 1
AT2G40610 ATHEXPALPHA1.11... expansin A8 (.1) Potri.013G154700
[exp]
3.31 0.7136 Pt-EXP2.8,PtrEXPA2
AT3G12600 ATNUDT16 nudix hydrolase homolog 16 (.1... Potri.016G036700
[exp]
11.74 0.6611
AT1G21340 DOF AtDof1,2 Dof-type zinc finger DNA-bindi... Potri.005G188900
[exp]
17.66 0.6605
AT1G79640 Protein kinase superfamily pro... Potri.003G186700
[exp]
22.20 0.6018
AT2G07560 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase... Potri.001G048300
[exp]
41.85 0.6464 Pt-HA1.2
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Potri.006G068300
[exp]
50.47 0.6099
AT1G64640 AtENODL8 early nodulin-like protein 8 (... Potri.001G085100
[exp]
51.35 0.6420
AT3G02870 VTC4 Inositol monophosphatase famil... Potri.010G156500
[exp]
89.59 0.5882
AT1G78580 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE... Potri.004G064600
[exp]
104.85 0.5813
AT5G47540 Mo25 family protein (.1) Potri.014G162100
[exp]
180.52 0.5390

Potri.001G382800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.