Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14770 251 / 1e-84 SWEET2, AtSWEET2 Nodulin MtN3 family protein (.1) AT1G21460 150 / 9e-45 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT5G53190 133 / 6e-38 SWEET3, AtSWEET3 Nodulin MtN3 family protein (.1) AT4G10850 133 / 6e-38 SWEET7, AtSWEET7 Nodulin MtN3 family protein (.1) AT1G66770 128 / 3e-36 SWEET6, AtSWEET6 Nodulin MtN3 family protein (.1) AT5G62850 126 / 2e-35 ATVEX1, SWEET5, AtSWEET5 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) AT5G13170 116 / 3e-31 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT4G15920 108 / 9e-29 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT5G50800 109 / 2e-28 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G50790 107 / 7e-28 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103600 [exp] 342 / 1e-120 AT3G14770 232 / 7e-77 Nodulin MtN3 family protein (.1) Potri.001G355500 [exp] 204 / 5e-66 AT3G14770 231 / 2e-76 Nodulin MtN3 family protein (.1) Potri.002G072600 [exp] 154 / 4e-46 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.002G072700 [exp] 154 / 4e-46 AT1G21460 345 / 5e-121 Nodulin MtN3 family protein (.1) Potri.002G072800 [exp] 154 / 4e-46 AT1G21460 345 / 4e-121 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 152 / 2e-45 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.012G031400 [exp] 144 / 3e-42 AT5G53190 310 / 3e-107 Nodulin MtN3 family protein (.1) Potri.015G021900 [exp] 144 / 3e-42 AT5G53190 286 / 9e-98 Nodulin MtN3 family protein (.1) Potri.015G074300 [exp] 130 / 5e-37 AT5G62850 290 / 8e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011990 [exp] 229 / 6e-76 AT3G14770 268 / 5e-91 Nodulin MtN3 family protein (.1) Lus10015245 [exp] 213 / 4e-69 AT3G14770 269 / 3e-91 Nodulin MtN3 family protein (.1) Lus10005411 [exp] 210 / 3e-68 AT3G14770 258 / 2e-87 Nodulin MtN3 family protein (.1) Lus10002783 [exp] 184 / 7e-57 AT3G14770 226 / 4e-73 Nodulin MtN3 family protein (.1) Lus10018932 [exp] 157 / 3e-47 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Lus10028634 [exp] 155 / 1e-46 AT1G21460 359 / 1e-126 Nodulin MtN3 family protein (.1) Lus10014932 [exp] 150 / 2e-44 AT5G53190 295 / 6e-101 Nodulin MtN3 family protein (.1) Lus10034880 [exp] 127 / 7e-36 AT5G62850 291 / 5e-100 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1) Lus10032426 [exp] 125 / 1e-34 AT4G10850 254 / 7e-85 Nodulin MtN3 family protein (.1) Lus10002364 [exp] 123 / 5e-34 AT5G62850 268 / 7e-91 VEGETATIVE CELL EXPRESSED1, Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [poplar] [flax] MtN3-like PF03083 [poplar] [flax] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Potri.001G383000.6 pacid=42793580 polypeptide=Potri.001G383000.6.p locus=Potri.001G383000 ID=Potri.001G383000.6.v4.1 annot-version=v4.1 ATGAGTGACTCTGTTCATAATCCTGTCTGGACCTCTTGCAAGGATGCAGCAGGAATCGCCGGGAATATCTTTGCTTTTGGGCTGTTTGTATCACCTATAC CAACATATAGGAGAATCATCAGAAACCGTTCAACGGAACAGTTCTCGGGGTTGCCGTATATATATGCACTAATGAATTGCTTGATCTGCATGTGGTACGG CATGCCCCTCATATCTGCTGATAATCTTTTGGTTGTCACTGTCAATTCTTTCGGCACTGTATTTCAATTAGCCTACATTATCTTGTTTATAATATATGCC GAGAGAAAAATAAAGGTTAGTATGTTAGCTTCGCTGCTAGTGGTGCTTGTCCTATTTGCAATCATAGTAGCAGGAAGCTTGCAAATCCATGATCGAATGA TACGGTGGATCTCTGTTGGGTCATTGACTGTTGTTTCTCTCATATCAATGTTCGCTTCCCCGTTGTTTATAATTAATTTGGTGATCCAAACAAAGAGTGT TGAATTCATGCCATTTTATCTCTCCCTTTCCACTTTCTTGATGAGCACCTCTTTCTTGCTGTATGGAGTATTGAATTTCGATGCCTTTATTTATGTTCCA AATGGCATTGGTACCATTTTGGGAATTATACAGTTGATGTTATACCTTCACTATAAGAAGAAATCCGTACAAGAGTCCAAAGAACCCTTGATAGTTTCGC ACGCATAA
AA sequence Show only first row Show all	>Potri.001G383000.6 pacid=42793580 polypeptide=Potri.001G383000.6.p locus=Potri.001G383000 ID=Potri.001G383000.6.v4.1 annot-version=v4.1 MSDSVHNPVWTSCKDAAGIAGNIFAFGLFVSPIPTYRRIIRNRSTEQFSGLPYIYALMNCLICMWYGMPLISADNLLVVTVNSFGTVFQLAYIILFIIYA ERKIKVSMLASLLVVLVLFAIIVAGSLQIHDRMIRWISVGSLTVVSLISMFASPLFIINLVIQTKSVEFMPFYLSLSTFLMSTSFLLYGVLNFDAFIYVP NGIGTILGIIQLMLYLHYKKKSVQESKEPLIVSHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G383000 [exp]	0	1
AT5G47435			formyltetrahydrofolate deformy...		Potri.003G078000 [exp]	6.16	0.8495
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	9.00	0.8444
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.018G104700 [exp]	15.65	0.7855
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	20.78	0.8274
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	21.81	0.8050	DAO.3
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Potri.003G079600 [exp]	24.18	0.7840
AT3G60810			unknown protein		Potri.002G148400 [exp]	25.92	0.7941
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Potri.010G073700 [exp]	26.26	0.8172
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	31.03	0.8113	Pt-EU3.1
AT3G60210			GroES-like family protein (.1)		Potri.002G135700 [exp]	31.30	0.7608

Compare expression of checked genes

Potri.001G383000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.