Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 387 / 3e-125 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 137 / 1e-33 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104000 [exp] 1298 / 0 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 389 / 3e-126 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 380 / 3e-122 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 377 / 8e-120 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 374 / 2e-118 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.011G125951 [exp] 322 / 5e-99 AT3G42170 313 / 2e-95 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 311 / 2e-94 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 308 / 7e-93 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.012G059200 [exp] 140 / 2e-34 AT1G18560 953 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005558 [exp] 986 / 0 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10032337 [exp] 385 / 1e-119 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10030063 [exp] 58 / 2e-08 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1) Lus10022109 [exp] 49 / 6e-07 ND / Lus10000359 [exp] 41 / 0.0002 ND 35 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region CL0361 [poplar] [flax] PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.001G383800.5 pacid=42790923 polypeptide=Potri.001G383701.1.p locus=Potri.001G383800 ID=Potri.001G383800.5.v4.1 annot-version=v4.1 ATGGAGGTATCAAATGAGTTAGCGATTAAGAAACCAAAGAGGTTGACATCTGTGGTATGGAATCACTTTCAAAGGATTAGGAAGGCTGATGTATGTTATG CAGTTTGTGTGCATTGTGACAAGAAACTCAGTGGGTCAAGTAATAGTGGGACTACGCATCTAAGGAATCACTTATTGCGATGTCTTAAAAGATCTAATTA TGATGTGTCACAACTGCTTGTGGCAAAGAAAAAGAAAAAGGACACTTCCCTTAGCCTTGCAAATGTCAATGTCAGTTATGATGAAGCACAAAGAAAAGAT GAATATATTAAGCCCACGGTTATGAAGTCTGATCTTGAGCAGAGAAAAGATGAAGTTATTAGCCTTGGAAGTTGTAGGTTTGATCAAGAACGGAGTCAGC TAGACCTTGCCCGTATGATTATATTGCATGGTTATCCATTGACCATGGTTGAGCATGTTGGATTCAAAAGATTTGTGAAGAATCTCCAGCCTTTGTTTGA GTTTGTACCAAATAGCTCCATTGAAGTCTCTTGTATGGAGTTTTATTTGAAAGAGAAGCAGAAAGTGTATGAGTTGATAAATAGATTGCATGGAAGAATT AACCTTGCTATTGAAATGTGGTCTTCTCCAGAAAATGCTGAATACATGTGTTTGATAGCACACTATATCGATGAGGATTGGAAATTACAACAGAAAATTC TAAATTTTGTGACACTGGATTCTTCTCATACTGAAGATGTGCTTTCAGAAGTGATTATAAATTGTCTCATGGAATGGGATGTTGAATACAAGTTATTTGC CATGACCTTTGATGATTGTTCTGCTGATGATGATATTGTGCTCCGAATTAAGGATCGGATCTCTCAAAACAGGCCTCTACTGAGTAATGGTCAATTGTTT GATGTTCGCTCTGCTGTGCATGTTCTGAATTTGATTGTTAAAGATGCCATGGAAACACTTCAAGAGGTGACTGAAAAGGTTCGAGGAAGTGTTAGCTATG TTAAAAGTTCACAGGTAATACAAGGGAAGTTCAATGACATTGCCCAGCAAATTGGAATCAGCAGTCAGAGGAATTTGGTTCTTGATTCGTCAACTCGGTG GAACTCAACATACTCCATGCTCGAAACAGTCATAGGATACAAGAGTGCATTTTGTTTTTTGCAAGAGCACGATCCAGCCTACACATCAGCTTTAAGTGAT ATAGAGTGGGAATGGGCCAAGTCCATCACTGGTTATTTGAAACTTTTTGTTGAAATCACCAATATCTTTTCTGGGGATAAATGTCCAACAGCAAACAGAT ATTTTCCTGAAATTTGTGATGTTCACATCCAGTTAATTGAATGGTGTAAGAACCCAGATGATTTTCTTAGTTCCATCGCATCAAAGATGAAAGCCAAGTT TGATAAATATTGGAGCAAGTGCAGTTTGGCTTTGGCAGTAGCAGCCATCTTAGATCCTCGATTCAAGATGAAATTGGTGGAGTATTACTACTCCCAGATT TATGGTAGTACTGCCCTGGATCGGATCAAGGAAGTTTCTGATGGCATCAAGGAGCTTTTCAATGCATACTCTATTTGCTCAACTTTGGTTGATCAAGGGT CAGCTTTACCTGGCAGCAGTTTACCTAGTACCAGTACTGACAGTAGGGACAGGTTAAAGGGCTTTGACAAGTTCCTCCATGAATCTTCTCAAGGTCAGAG TTCAATATCTGATTTGGACAAATACTTGGAAGAACCCGTCTTTCCTCGCAATTGTGATTTCAACATATTAAACTGGTGGAAAGTCCACACACCAAGGTAC CCTATCTTGTCTATGATGGCACGAGATATTCTGGGGACTCCCATGTCAACTGTTTCACCAGAGTTGGCTTTTGGTGTTGGGGGCAGGGTTCTTGATAGTT ATCGCAGTTCCCTTAATCCAGACACTCGACAAGCTCTAATATGCACACGGGATTGGTTGCGAGTGGAATCAGAAGATCACAATCCATCTTCTGCTTTAGC GCTTTATGTTGAAGCGAATTAG
AA sequence Show only first row Show all	>Potri.001G383800.5 pacid=42790923 polypeptide=Potri.001G383701.1.p locus=Potri.001G383800 ID=Potri.001G383800.5.v4.1 annot-version=v4.1 MEVSNELAIKKPKRLTSVVWNHFQRIRKADVCYAVCVHCDKKLSGSSNSGTTHLRNHLLRCLKRSNYDVSQLLVAKKKKKDTSLSLANVNVSYDEAQRKD EYIKPTVMKSDLEQRKDEVISLGSCRFDQERSQLDLARMIILHGYPLTMVEHVGFKRFVKNLQPLFEFVPNSSIEVSCMEFYLKEKQKVYELINRLHGRI NLAIEMWSSPENAEYMCLIAHYIDEDWKLQQKILNFVTLDSSHTEDVLSEVIINCLMEWDVEYKLFAMTFDDCSADDDIVLRIKDRISQNRPLLSNGQLF DVRSAVHVLNLIVKDAMETLQEVTEKVRGSVSYVKSSQVIQGKFNDIAQQIGISSQRNLVLDSSTRWNSTYSMLETVIGYKSAFCFLQEHDPAYTSALSD IEWEWAKSITGYLKLFVEITNIFSGDKCPTANRYFPEICDVHIQLIEWCKNPDDFLSSIASKMKAKFDKYWSKCSLALAVAAILDPRFKMKLVEYYYSQI YGSTALDRIKEVSDGIKELFNAYSICSTLVDQGSALPGSSLPSTSTDSRDRLKGFDKFLHESSQGQSSISDLDKYLEEPVFPRNCDFNILNWWKVHTPRY PILSMMARDILGTPMSTVSPELAFGVGGRVLDSYRSSLNPDTRQALICTRDWLRVESEDHNPSSALALYVEAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42170			BED zinc finger ;hAT family di...		Potri.001G383800 [exp]	0	1
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.019G130900 [exp]	6.78	0.6947	Pt-P68.1
AT5G07630			lipid transporters (.1)		Potri.003G107501 [exp]	14.31	0.7671
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	18.22	0.6562
					Potri.004G011600 [exp]	20.49	0.7486
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	30.85	0.7344
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	44.44	0.6936
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	65.40	0.6793
AT3G56320			PAP/OAS1 substrate-binding dom...		Potri.019G056800 [exp]	70.68	0.6987
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.015G076650 [exp]	73.89	0.6851
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	85.53	0.6655

Compare expression of checked genes

Potri.001G383800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.