Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53490 480 / 2e-172 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104500 [exp] 562 / 0 AT1G53490 503 / 0.0 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005260 [exp] 437 / 2e-155 AT1G53490 414 / 1e-146 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G383900.23 pacid=42792592 polypeptide=Potri.001G383900.23.p locus=Potri.001G383900 ID=Potri.001G383900.23.v4.1 annot-version=v4.1 ATGAGATGCAATGCGTGCTGGCGAGAATTGGAAGGGCGAGCTGTTTCTACTACTTGTGGTCACCTCTTATGTACTGAAGATGCAAGCAAGATCCTTAATA GTGATGCAGCATGTCCAATCTGTGATCAAGTGCTTTCTGAGAGCCTTATGAAACCTGTGGAGATCAATCCAAATGACGAATGGATAAATATGGCAATGGC TGGAATATCTCCACAGATATTGATGATAAGTGCATACAGAAGCGTGATGTTTTATATTGGGCAAAGGGAACTTGAGATGCAATACAAGATGAATAGAGTT GTAGCTCAGTGCCGGCAGAAATGTGAATCCATGCAAGAAAAGTTTACAGAAAAACTGGAGCAGCTGCATACTGCATATCAGAAAATAGCCAAAAGGTGTC AGATGATGGAACAAGAGATTGATAGTTTGTCAAAGGATAAGCAAGAGCTCGAGGAAAAATTTTCAGAGAAATCCAGGCAGAAGAGGAAACTTGATGAAAT GTACGATCAGTTGAGGAATGAGTACGATTCAATGAAAAGATCAGCCATCCAACCGGCAAACAATTTCTTTTCAAGAAATGAGCCTGATTTGTTCTCAAAC CATGCTGCTACCATGATGGATAACAGAAACCCTATCTGGAAAGTTGACCTAATTCCTGCAGATTGGACGGTTTCCACTCCTCCAACTCCAGGGCCTCGGG AGGATATATGGCCAGCAAGACAGAACAGCCCTAATTCTAGTCCTTTTGACATCTCTGATGGCTCACCAGCAAAACAAGCAGCCATGCGAGTTGATTTTGG AAATAGAAGACCTGGTGCTGTCCATGCCTTTGGAGCTGGATCTGGCAACCCCTCAATGACGTTAAGGAACTTGATTCTATCCCCGATAAAGCGCCCTCAG CTTTCTCGTAGCCGCCCTCAAATGTTCACTTTGTAG
AA sequence Show only first row Show all	>Potri.001G383900.23 pacid=42792592 polypeptide=Potri.001G383900.23.p locus=Potri.001G383900 ID=Potri.001G383900.23.v4.1 annot-version=v4.1 MRCNACWRELEGRAVSTTCGHLLCTEDASKILNSDAACPICDQVLSESLMKPVEINPNDEWINMAMAGISPQILMISAYRSVMFYIGQRELEMQYKMNRV VAQCRQKCESMQEKFTEKLEQLHTAYQKIAKRCQMMEQEIDSLSKDKQELEEKFSEKSRQKRKLDEMYDQLRNEYDSMKRSAIQPANNFFSRNEPDLFSN HAATMMDNRNPIWKVDLIPADWTVSTPPTPGPREDIWPARQNSPNSSPFDISDGSPAKQAAMRVDFGNRRPGAVHAFGAGSGNPSMTLRNLILSPIKRPQ LSRSRPQMFTL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53490			RING/U-box superfamily protein...		Potri.001G383900 [exp]	0	1
AT2G02910			Protein of unknown function (D...		Potri.010G094000 [exp]	3.16	0.8238
AT1G10700		PRS3	phosphoribosyl pyrophosphate (...		Potri.010G045000 [exp]	5.19	0.7858
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	8.42	0.8373
AT1G49590			C2H2 and C2HC zinc fingers sup...		Potri.009G105500 [exp]	15.58	0.7586
AT3G04490			unknown protein		Potri.019G019100 [exp]	18.43	0.7956
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	26.32	0.8049
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	29.89	0.7884
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	40.00	0.7720
AT3G48860			unknown protein		Potri.015G104600 [exp]	41.82	0.7554
AT5G19485			transferases;nucleotidyltransf...		Potri.009G066400 [exp]	59.74	0.7691

Compare expression of checked genes

Potri.001G383900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.