Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78610 852 / 0 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT1G53470 836 / 0 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 820 / 0 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT2G17000 709 / 0 Mechanosensitive ion channel family protein (.1) AT2G17010 465 / 3e-151 Mechanosensitive ion channel family protein (.1) AT5G12080 430 / 1e-138 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 405 / 6e-129 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G49260 44 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105500 [exp] 1326 / 0 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.004G178900 [exp] 825 / 0 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 666 / 0 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Potri.006G144100 [exp] 480 / 4e-157 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 468 / 2e-152 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G073000 [exp] 462 / 4e-151 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 446 / 7e-145 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038148 [exp] 1031 / 0 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10042499 [exp] 1021 / 0 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10005556 [exp] 796 / 0 AT1G53470 758 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10022654 [exp] 780 / 0 AT1G78610 817 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025092 [exp] 727 / 0 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023990 [exp] 723 / 0 AT1G78610 762 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10013692 [exp] 542 / 0 AT1G53470 496 / 6e-170 mechanosensitive channel of small conductance-like 4 (.1) Lus10004153 [exp] 554 / 9e-179 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10016423 [exp] 444 / 7e-144 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 441 / 8e-142 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.001G384100.2 pacid=42790594 polypeptide=Potri.001G384100.2.p locus=Potri.001G384100 ID=Potri.001G384100.2.v4.1 annot-version=v4.1 ATGGCCCTCAATTCAACTGACCGGAAAGATGTGATTTTGAGTATGGACGAGTTCTGTGATGAAGGTGTTAACGTGGGATCAAATAACAACAACACTGGAG GAGGAGGAGGAGGGAGAATTTGGAGGGAGTCAAGCTGTGATTTCTTGAACAATGCAAATAACAAGGACAAGCGACCTCTCATGAATGGCGACAACAACAG TACCAATACTAATGGAAGTAGATGCTATAAACTTGATTTTAATGGTCATCAGAACAGTAACAGTGGTGTTACTGCTAGTGCTAGTGATAGCGGTTCAGTA ATGGAGGAGGAAGATCCACCCTCGAAGCTGATTGGTCATTTCTTGCACAGACAGAAAGCATCAGGTGAGTTTTGTTTAGATATGGACTTAGAGATGATGA CTCATCTTCAAAACGATACTGTTGTTCCTCATAAGAATTTACCTCCTGTTTCTGAGTCTCCTACCACTAATACGAATCGGGTTTCTTTTGACCCAAACCC ACCCGGCTCAAGTGAGTCATTGAGGAGGAGAAGGGACTTCAAGAATTCTTCTCCACGTAATCAAAATAATGGTGATGGTGAGATTTTGAAGTGTAGCTCT AGCAACGACGGATCGTTTTGTAGCAATTCCTCGTTTAAGAGGAAGTCTAGTTTGTTGAAGGAGCGGACAAAGTCTAGATTGATGGACCCACCGCCGCATC CACCGGAGAAGTCAGGGAGAGTGGTTGTTGGGAGGTCAGGGCAGTTGAAGTCTGGATTTTTAGGGAAAGGGAGTGTTGTTGATGAAGAGGAAGATGACCC TTTATTGGAAGAGGATTTGCCTGATGAGTATAAAAAAGATAAGCTTGATATTTGGATTTTACTTGAATGGTTGAGTTTGATTGTTATTATTGCTGCTTTA GTTTGTAGTCTTGCAATTCCATATTTGAGAACTAAGAATTTGTGGAGACTTCGGTTGTGGAAATGGGAGGTTTTGGTTCTGGTTTTGATTTGTGGGAGAC TGGTTTCTGGTTGGGTTATTAAGGTTATTGTTTTTTTCATCGAGAGAAATTTTCTTTTGCGAAAAAGGGTTTTATATTTTGTTTATGGAATTAGGAATGC TGTGCAGAATTGTTTGTGGTTAGGGCTTGTTTTGATTGCTTGGCACTACTTATTTGACAAAAGAGTTGAGAGGGAAACTAGGAGTACGACACTTGGGTTT GTGACTAAGGTTTTGGTGTGTCTAGTGGTGGGTACCTTGCTGTGGTTGGTGAAGACCTTAGTGGTTAAAGTACTTGCATCTTCATTTCATGTGAGCACTT ACTTTGATCGGATTCAGGAATCGCTGTTTAATCAGTATGTAATCGAAACCTTATCTGGCCCCCCATTGGTTGAAATGAAAAGAAATGAAGAGGAGGAAGA GAGACTTCTTGCAGAGGTAAAAAAGTTGCAGAATGCAGGTGCCACCGTGCCCCCTGGCCTTAAGGCAACAGCGAGCCCGTCACCATCACAGAGTGCAAAG GTGATAGGAAGTGGTAGTTTCCAGAAAAGCGCTCGAATTGGTACCCCCATCCCCAAGCTTTCTCGTGCACTTTCCAACAAAGTTGATGAGGGAGATGAGG GGATAACAATCAACCACTTGCACAAATTGAATCCTAAGAATGTTTCTGCTTGGAATATGAAGAGGCTAGTGAATATAATTCGACATGGTGCTCTGTCCAC ACTGGATGAGCAGATACAAAATTCTAATCACGGTGATGAAGAGTCAGCTACAAAGATTAGAAGCGAATTTGAGGCAAAAGCTGCAGCAAGGAACATATTC ACAAATGTTGCTAGGCAAGGGTCTCGGTATATCTACCTGGATGACATCATGCGTTTCATGCAAGAAGATGAGGCTTCAAAAGCCATGAGCCTCTTTGAGG GAGCATCTGAAAGCAACAAAATCAGCAAAAAATGTTTGAAAAATTGGGTGGTCAATGCTTTCAGAGAACGGAGAGCACTTGCTTTGACACTCAATGACAC AAAAACAGCTGTGAACAAACTGCATCGTATGGTGAACTTTCTGGTTGGGATTGTAATAGCAATTATTTGGCTTCTTATACTAGGAATTGCTACAAGCAAG TTTCTCCTCTTTCTAAGTTCACAACTTCTTCTCGTGGCTTTCATATTTGGAAACACCTGCAAAACCGTGTTTGAATCTATTATTTTCTTATTTGTGATCC ATCCATTTGATGTGGGCGATCGCTGTGAAATAGATGGAGTTCAGATGGTGGTAGAAGAGATGAACATTTTAACTACTGTCTTTTTAAGATTTGACAACCA GAAGATAATAATCACAAACAGTGTTCTCGCTACCAAAGCCATTGGCAACTACTACCGTAGCCCTGATATGGGGGATGCAGTTGAGTTCCTCATCCACCTA GTTACTCCAGCTGAAAAGATCGCCATTGTGAAACAAAGAATAAGCAGTTATATTGAAAGCAAAAAGGACCACTGGTATCCTTCCCCCTTGATTATATTCA AGGATGCAGAAGACTTGACCAGGGTGCGGATAGCAGTTTGGTTGACACATAGGATGAACCACCAAGACATGGGAGAGAGGTTTATAAGAAGATCTCTCTT GCTGGATGAGATGATGAAGATTTTCAGGGAGCTTGACATTCAATATCGCTTGCTTCCTCTTGACATCAATGTTCGTGCCTTGCCTCCTGTTATGTCTGAC CGCCTTCCTGCCAATTGGACCAACTGA
AA sequence Show only first row Show all	>Potri.001G384100.2 pacid=42790594 polypeptide=Potri.001G384100.2.p locus=Potri.001G384100 ID=Potri.001G384100.2.v4.1 annot-version=v4.1 MALNSTDRKDVILSMDEFCDEGVNVGSNNNNTGGGGGGRIWRESSCDFLNNANNKDKRPLMNGDNNSTNTNGSRCYKLDFNGHQNSNSGVTASASDSGSV MEEEDPPSKLIGHFLHRQKASGEFCLDMDLEMMTHLQNDTVVPHKNLPPVSESPTTNTNRVSFDPNPPGSSESLRRRRDFKNSSPRNQNNGDGEILKCSS SNDGSFCSNSSFKRKSSLLKERTKSRLMDPPPHPPEKSGRVVVGRSGQLKSGFLGKGSVVDEEEDDPLLEEDLPDEYKKDKLDIWILLEWLSLIVIIAAL VCSLAIPYLRTKNLWRLRLWKWEVLVLVLICGRLVSGWVIKVIVFFIERNFLLRKRVLYFVYGIRNAVQNCLWLGLVLIAWHYLFDKRVERETRSTTLGF VTKVLVCLVVGTLLWLVKTLVVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEMKRNEEEEERLLAEVKKLQNAGATVPPGLKATASPSPSQSAK VIGSGSFQKSARIGTPIPKLSRALSNKVDEGDEGITINHLHKLNPKNVSAWNMKRLVNIIRHGALSTLDEQIQNSNHGDEESATKIRSEFEAKAAARNIF TNVARQGSRYIYLDDIMRFMQEDEASKAMSLFEGASESNKISKKCLKNWVVNAFRERRALALTLNDTKTAVNKLHRMVNFLVGIVIAIIWLLILGIATSK FLLFLSSQLLLVAFIFGNTCKTVFESIIFLFVIHPFDVGDRCEIDGVQMVVEEMNILTTVFLRFDNQKIIITNSVLATKAIGNYYRSPDMGDAVEFLIHL VTPAEKIAIVKQRISSYIESKKDHWYPSPLIIFKDAEDLTRVRIAVWLTHRMNHQDMGERFIRRSLLLDEMMKIFRELDIQYRLLPLDINVRALPPVMSD RLPANWTN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.001G384100 [exp]	0	1
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.002G016100 [exp]	1.41	0.8725
AT3G15260			Protein phosphatase 2C family ...		Potri.011G116700 [exp]	1.41	0.8711
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G101100 [exp]	3.00	0.8469
AT2G01300			unknown protein		Potri.008G127800 [exp]	4.12	0.7815
AT4G09670			Oxidoreductase family protein ...		Potri.005G200300 [exp]	9.53	0.6725
AT5G39110			RmlC-like cupins superfamily p...		Potri.009G140350 [exp]	11.48	0.7536
AT3G05980			unknown protein		Potri.010G090700 [exp]	15.23	0.8330
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.008G190800 [exp]	20.68	0.6504
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107900 [exp]	22.24	0.8120
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085300 [exp]	24.37	0.8116

Compare expression of checked genes

Potri.001G384100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.