Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 125 / 9e-32 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 43 / 0.0002 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G027200 [exp] 130 / 2e-33 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G093300 [exp] 95 / 6e-21 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 47 / 1e-05 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 46 / 3e-05 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G222500 [exp] 44 / 0.0002 AT2G40360 959 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 42 / 0.0005 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025732 [exp] 277 / 5e-90 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035930 [exp] 176 / 7e-53 AT3G49180 59 / 6e-10 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013988 [exp] 112 / 2e-26 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 48 / 8e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 48 / 8e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G384200.1 pacid=42789549 polypeptide=Potri.001G384200.1.p locus=Potri.001G384200 ID=Potri.001G384200.1.v4.1 annot-version=v4.1 ATGTCTTCTTCTCGTGAGATTGTCCTCACTAGCTCTCCTGATGGCCCCATTACTGCTTATGACATCTTCTCAGGCACCACCCTAGCTCGCTTCTCTGGCA GCAGGTCACCACGCCATGGCCTTGTCCTTGCAGGGAAGGCTTATATTGCCGCCTCTCATATCTCCTCAGCCACTGCCTCAGGCTCAATTCACCTGTACAA TTGGTGGTCCTCGACAGCTTTTCACCATCTGCCTGTCCCTGAACCTGTGGCTCCACTCGCTGCCACTCCTGATGGGTCATTTTTATTTGCTGGTGGCGTT TCTGGGAATATCTATGCTCTTTCCATCCCTTCAGGTAACATTCTGAAATCATTTCCTGCCCACACTAAACCTGTATCCTGCCTCACAATCAGCAATGACG GGTCACTCCTAATTTCTGGTGGTGATGATGGTACCATACTTGTTGTTCCAATCTTTCAACTTGTTGAGCAAACAACGGATGGGAATTGTAAAGACTTGAT GTTGCATAGCTTTGTTGCACATGATGGTCCAGTTACGGCTATTACTTGTATTGGGTTCTGCCACTATACTGTAATTTCATGCTCAACAGATTGCACATGC AAGTTGTGGAGCCTTTTGGATGGAACAAACCTGCGCAGAATTACATTTCCATGTGCAATTTCAAGGATTGCTTTGGATCCAACAGGGACAGAATTCTATG CTGCAGGGGCAGATGGTTTGATTTATAAGGGATTTTTGAAAGTCGGAAGCAGAAAACAAGTGAGCCCCATGCTTGAATTGGCGATCTTGGCTGACAAACA TGGTGGAGCAATCATATCTGTGGTGATGATGAATGCGGGGAAGAATCTGGTATCTGCTGCAGAAGATGGGAGGGTGTATTTGTGGGAAGTTGAAAGAGGG CAGGTGATTATGGTTCTTGGCAATAACATGGAAAGCATAAGCGATCTAGTTGTCGCCAGTGGGATTTGTGATGCTAGAAGACAAGGTGTTAGAGTTGGTG AAAACATGAATAAATCTGTTGGTGGAGGTATTGTGCTATCTGGAAAAGAGTTTACCAGATCAGTAAAGGATACAGTAGAGATAGAGGATGTCTTATCTGT GGCAGCAAAAGATAGGAGCAAAACCATTGATATGCTGGAGTCTGCGATTGGAGTGTACGAGAGACTATTGGAACTCATTCTTAAGGAAGCCAAGGGAGGC ACTAGCAGGAATAGCCATGAGGACAACGGTGACATGTAA
AA sequence Show only first row Show all	>Potri.001G384200.1 pacid=42789549 polypeptide=Potri.001G384200.1.p locus=Potri.001G384200 ID=Potri.001G384200.1.v4.1 annot-version=v4.1 MSSSREIVLTSSPDGPITAYDIFSGTTLARFSGSRSPRHGLVLAGKAYIAASHISSATASGSIHLYNWWSSTAFHHLPVPEPVAPLAATPDGSFLFAGGV SGNIYALSIPSGNILKSFPAHTKPVSCLTISNDGSLLISGGDDGTILVVPIFQLVEQTTDGNCKDLMLHSFVAHDGPVTAITCIGFCHYTVISCSTDCTC KLWSLLDGTNLRRITFPCAISRIALDPTGTEFYAAGADGLIYKGFLKVGSRKQVSPMLELAILADKHGGAIISVVMMNAGKNLVSAAEDGRVYLWEVERG QVIMVLGNNMESISDLVVASGICDARRQGVRVGENMNKSVGGGIVLSGKEFTRSVKDTVEIEDVLSVAAKDRSKTIDMLESAIGVYERLLELILKEAKGG TSRNSHEDNGDM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.001G384200 [exp]	0	1
					Potri.006G101150 [exp]	10.44	0.9041
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.016G112400 [exp]	13.19	0.8946
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.002G224100 [exp]	16.24	0.8998	ACO2,ACO1.1
AT5G01210			HXXXD-type acyl-transferase fa...		Potri.006G097500 [exp]	16.24	0.8678
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	19.44	0.8979
AT2G01300			unknown protein		Potri.010G115100 [exp]	20.61	0.8530
					Potri.006G038300 [exp]	22.53	0.8971
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.015G075902 [exp]	29.93	0.8945
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.015G076000 [exp]	32.74	0.8940	Pt-CA1.1
					Potri.007G014501 [exp]	35.77	0.8937

Compare expression of checked genes

Potri.001G384200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.