Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78620 415 / 3e-146 Protein of unknown function DUF92, transmembrane (.1.2) AT5G19930 42 / 0.0004 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G105700 [exp] 530 / 0 AT1G78620 392 / 7e-137 Protein of unknown function DUF92, transmembrane (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013691 [exp] 406 / 6e-143 AT1G78620 404 / 7e-142 Protein of unknown function DUF92, transmembrane (.1.2) Lus10005554 [exp] 404 / 3e-142 AT1G78620 410 / 3e-144 Protein of unknown function DUF92, transmembrane (.1.2) Lus10038149 [exp] 361 / 3e-126 AT1G78620 349 / 1e-121 Protein of unknown function DUF92, transmembrane (.1.2) Lus10042501 [exp] 322 / 2e-111 AT1G78620 306 / 3e-105 Protein of unknown function DUF92, transmembrane (.1.2) Lus10017753 [exp] 45 / 5e-05 AT5G19930 402 / 1e-142 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [poplar] [flax] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Potri.001G384300.1 pacid=42790099 polypeptide=Potri.001G384300.1.p locus=Potri.001G384300 ID=Potri.001G384300.1.v4.1 annot-version=v4.1 ATGGCACTTTCGACACTCCTCCACATCAAACACCCAATTCTCTTCGCTCCTCTCCACTTCTCCAAATCTCAAATCCACCCCAGAAAACCATTAATCCCCA CTTCCATCCCAACACTTAAATCCCACAACAAAATGCTCCCTCACAGACCAAATGCAATCTCGACGCAAGGAGTTCTATCGGAGGCTATGAGATTGATCCA ATCAGCACCACCCACTTGGCAATCAGCGCTTTTCAGTAATCTCTCTATTTTTCTTGTTGGGTCTCCAATTTTGGTATCTGGGCTCTCTCTTTCTGGGATT TTTGCTGCTTTTTTGTTGGGTACTCTCACTTGGCGCGCTTTTGGTCCTTCTGGGTTCCTCCTTGTTGCCTCTTACTTTATTATTGGAACTGCAGCTACAA AAGTGAAAATGGCACAGAAGGAAGCTCAAGGAGTGGCTGAGAAGAGGAAGGGAAGAAGAGGACCAGGCAGTGTGATTGGTTCAAGTGCTGCCGGTTGTGT GTGCGCTTTTCTGTCAATATTTCAAGTAGGGGATGAGGCATTTCTTGCACTTTGGCGACTTGGGTTTATTGCCAGTTTCTGTACCAAGCTGAGTGATACA GTCTCAAGTGAGATAGGGAAGGCATATGGAAAAACTACGTACCTTGTTACAACATTTAAGGTAGTTCCAAGGGGAACAGAAGGGGCTGTCAGTGCTGAGG GAACACTAGCTGGATTGTTGGCCTCTATACTTCTTGCCTCCGTTGGTTGTCTCATGGGTGAGATAAATGTACCTGAAGTAGTTATATGTGTGATAGCTTC CCAAATTGCTAATGTTGGTGAGAGCATAATAGGTGCTGCCTTCCAGGATAAAGAAGGGTTTCAATGGCTCAACAATGATGCTGTCAACGTCATCAACATA TCCATGGGCAGCATTTTAGCAGTACTGATGCAGCTAGTCATTCTCCAAAAATGGGGTGCTTAA
AA sequence Show only first row Show all	>Potri.001G384300.1 pacid=42790099 polypeptide=Potri.001G384300.1.p locus=Potri.001G384300 ID=Potri.001G384300.1.v4.1 annot-version=v4.1 MALSTLLHIKHPILFAPLHFSKSQIHPRKPLIPTSIPTLKSHNKMLPHRPNAISTQGVLSEAMRLIQSAPPTWQSALFSNLSIFLVGSPILVSGLSLSGI FAAFLLGTLTWRAFGPSGFLLVASYFIIGTAATKVKMAQKEAQGVAEKRKGRRGPGSVIGSSAAGCVCAFLSIFQVGDEAFLALWRLGFIASFCTKLSDT VSSEIGKAYGKTTYLVTTFKVVPRGTEGAVSAEGTLAGLLASILLASVGCLMGEINVPEVVICVIASQIANVGESIIGAAFQDKEGFQWLNNDAVNVINI SMGSILAVLMQLVILQKWGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78620			Protein of unknown function DU...		Potri.001G384300 [exp]	0	1
AT1G32730			unknown protein		Potri.003G085901 [exp]	4.47	0.8042
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.012G138600 [exp]	17.43	0.7003
AT5G06620		SDG38, ATXR4	SET domain protein 38 (.1)		Potri.006G196566 [exp]	18.27	0.7860
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Potri.001G186000 [exp]	31.22	0.7691	Pt-TED3.2
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G139300 [exp]	38.47	0.6244
AT4G22000			unknown protein		Potri.015G012700 [exp]	39.45	0.7577
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	39.77	0.7599
AT1G30290			Tetratricopeptide repeat (TPR)...		Potri.011G082300 [exp]	45.43	0.7593
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	48.43	0.6742
					Potri.003G152950 [exp]	54.44	0.7485

Compare expression of checked genes

Potri.001G384300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.