Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78630 351 / 1e-123 EMB1473 embryo defective 1473, Ribosomal protein L13 family protein (.1) AT3G01790 82 / 6e-19 Ribosomal protein L13 family protein (.1.2) AT5G48760 48 / 1e-06 Ribosomal protein L13 family protein (.1.2) AT3G24830 47 / 2e-06 Ribosomal protein L13 family protein (.1) AT3G07110 46 / 5e-06 Ribosomal protein L13 family protein (.1.2) AT4G13170 45 / 1e-05 Ribosomal protein L13 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G106100 [exp] 424 / 1e-152 AT1G78630 342 / 3e-120 embryo defective 1473, Ribosomal protein L13 family protein (.1) Potri.001G334000 [exp] 86 / 4e-20 AT3G01790 299 / 2e-104 Ribosomal protein L13 family protein (.1.2) Potri.017G066000 [exp] 85 / 5e-20 AT3G01790 266 / 3e-91 Ribosomal protein L13 family protein (.1.2) Potri.017G054600 [exp] 50 / 2e-07 AT5G48760 351 / 5e-125 Ribosomal protein L13 family protein (.1.2) Potri.002G242600 [exp] 50 / 3e-07 AT4G13170 357 / 4e-127 Ribosomal protein L13 family protein (.1) Potri.001G314500 [exp] 50 / 4e-07 AT5G48760 384 / 7e-138 Ribosomal protein L13 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005553 [exp] 332 / 7e-116 AT1G78630 332 / 8e-116 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10041940 [exp] 316 / 2e-109 AT1G78630 317 / 4e-110 embryo defective 1473, Ribosomal protein L13 family protein (.1) Lus10014597 [exp] 82 / 6e-19 AT3G01790 309 / 3e-108 Ribosomal protein L13 family protein (.1.2) Lus10032063 [exp] 82 / 3e-18 AT3G01790 308 / 3e-107 Ribosomal protein L13 family protein (.1.2) Lus10032599 [exp] 50 / 3e-07 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10043151 [exp] 50 / 3e-07 AT5G48760 380 / 2e-136 Ribosomal protein L13 family protein (.1.2) Lus10016679 [exp] 50 / 3e-07 AT5G48760 386 / 9e-139 Ribosomal protein L13 family protein (.1.2) Lus10007137 [exp] 50 / 3e-07 AT5G48760 384 / 6e-138 Ribosomal protein L13 family protein (.1.2) Lus10011857 [exp] 49 / 9e-07 AT5G48760 394 / 8e-142 Ribosomal protein L13 family protein (.1.2) Lus10022793 [exp] 49 / 1e-06 AT5G48760 390 / 2e-140 Ribosomal protein L13 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00572 [poplar] [flax] Ribosomal_L13 Ribosomal protein L13
Representative CDS sequence Show only first row Show all	>Potri.001G384600.1 pacid=42787977 polypeptide=Potri.001G384600.1.p locus=Potri.001G384600 ID=Potri.001G384600.1.v4.1 annot-version=v4.1 ATGGCAATGCTTTGTGCCTCATCTTCTTTTACTTCAACAAAACCCTCTTGTTCTTACTCAGCAAGGAACGGCACTAGTATTTGTACTACCCCTTTTGTTG CTGGGTTCTCATTTTCACAATCAAAATTAAAACCATGTGTCAAAACATCTTTATTTCCTTTGAATAATGGCAGTCGTAGTGTTGAGGTTCGGTGCGAGAA GAAAGAGAAAAACGTAGTCACTCGCGTTCCTCTTGACCAACGCTGGTTGTTTGAAGAATCTGAACTTAATGGCCCTGATATTTGGAATACGACATGGTAT CCTAAAGCTGCAGATCATATTAACACGGAGAAAACTTGGTATATTGTTGATGCAACTGACAAGATTCTTGGAAGACTGGCATCTACAATTGCCATTTACA TTCGTGGAAAGAATTTGGCGACTTACACTCCTAGTGTGGACATGGGGGCTTTTGTGATCGTGGTAAATGCTGAGAAAGTTGCTGTATCTGGTAAGAAGAG GACCCAAAAGTTATACAGAAGGCATTCAGGAAGACCAGGTGGTATGACAGTGGAGACATTTGATCAGCTACAACAGAGGATTCCAGAAAGAATTATTGAA CATGCTGTTCGTGGTATGCTTCCTAAAGGAAGGCTTGGCAGAGCATTATTCAACCACCTTAAGGTTTACACGGGCCCAACTCATCCACACGAGGCTCAGA AGCCGATTGACTTGCCGATAAGGGACAAGAGAATACAAATGGAGAGATAG
AA sequence Show only first row Show all	>Potri.001G384600.1 pacid=42787977 polypeptide=Potri.001G384600.1.p locus=Potri.001G384600 ID=Potri.001G384600.1.v4.1 annot-version=v4.1 MAMLCASSSFTSTKPSCSYSARNGTSICTTPFVAGFSFSQSKLKPCVKTSLFPLNNGSRSVEVRCEKKEKNVVTRVPLDQRWLFEESELNGPDIWNTTWY PKAADHINTEKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIE HAVRGMLPKGRLGRALFNHLKVYTGPTHPHEAQKPIDLPIRDKRIQMER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	0	1
AT1G65230			Uncharacterized conserved prot...		Potri.013G085300 [exp]	1.41	0.9891
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	2.44	0.9849
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	2.44	0.9878	TMP14.1
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.001G450800 [exp]	4.00	0.9856
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	4.89	0.9858	Pt-RPL12.6
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	6.32	0.9852
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	8.36	0.9848
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	9.38	0.9846
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	9.79	0.9808
AT2G23820			Metal-dependent phosphohydrola...		Potri.006G178600 [exp]	9.89	0.9576

Compare expression of checked genes

Potri.001G384600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.