Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53440 1135 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53430 1106 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 883 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 848 / 0 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 839 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 758 / 0 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29730 736 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 726 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 712 / 0 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 657 / 0 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G386300 [exp] 1816 / 0 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G026325 [exp] 1448 / 0 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 1441 / 0 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 1378 / 0 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G106400 [exp] 1369 / 0 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025800 [exp] 1057 / 0 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 961 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385900 [exp] 957 / 0 AT1G53440 889 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 947 / 0 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 1182 / 0 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 1074 / 0 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 1070 / 0 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 1027 / 0 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031374 [exp] 845 / 0 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10015239 [exp] 795 / 0 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031199 [exp] 653 / 0 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 650 / 0 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005418 [exp] 622 / 0 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10026207 [exp] 355 / 3e-113 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G385300.1 pacid=42788849 polypeptide=Potri.001G385300.1.p locus=Potri.001G385300 ID=Potri.001G385300.1.v4.1 annot-version=v4.1 ATGGCGTTGTGGCCATCATTACTGTCGAAGACTCTCTCTGTTTTGGTTTCTGGATTTGTGGTGTTGAATTGCTTTGCTGTGGACAAGTTTGGATCCCATG CTCAAGTAGTCGCTCCACTCTTGCCACAAGATGAAGTGCAAACTCTTCAAAACATATCCAACAAGTTGAACATCAGCAACTGGGCCACCATCAATCGAAC TTCTTGCGGTAGTGCACAGTGGAACCAGACCATCGACAGCAAAACTGAAAGCATTGTTACATGCAACTGTACATTTGAGAATGGCTCCGTCTGTCATGTC ACTAGCATAAGCGTGAAAGGTTTTAATTTGAATGGAGTTCTCCCAGAGGAACTAGGAGACCTTCCTCATCTGCTTGAAATTGATCTGGCTCGCAACTACA TTAGTGGAACAATCCCTCCAAGACTTGCTCAGCTCCCCAACCTTAAGATTTTGTCTCTCATCGTTAACCGTCTCACCGGCCCAATTCCCCTGGAAATAGG CAACATTACCACAATGGAGGAGCTGGTCCTGGATGATAATCTGCTAGGAGGGTCTCTTCCTCCAGAACTTGGAAATTTGACAAGCTTAAAAAGACTTGTC CTTTCCTCAAACAATTTTACAGGAAGTATACCAGAGACACTTGGCAATTTAAAGAATTTAACCGAATTTATGATAGATGGGAGCGAACTGTCAGGGAAGA TACCTGAATTTATCGGGAACTGGATCAATATTGAAAAATTGGATTTGCAAGGAACATCCATGGAGGGTCCTATTCCATCTAGCATTTCATTGTTAACAAG TTTAAAATCTCTGAGAATATCCGATTTGAATGGATCAAGTTCAACTTTCCCTAATCTACAGGCCATGAAAAACTTGGAAAATCTCATTCTGAGAAATTGT TTAATTACTGATTCAATCCCAGACTACATTGTAAATATGTCGTCTTTGAATATTTTAGATTTGAGCTTCAACAAGTTGACAGGCCGAATCTCTAACTTCA CGAATTTGGAAAGCCGAACGGTGTTTTTGAACAACAACTTACTAACTGGAGAAGTGCCTAATTGGGCATTGAACAACAGGAAGCAATTGGATTTGTCCTA CAACAATTTTACGTGGTCAGCTTTAGAAGGGTCAGCTTTAGGTGGTTGCCAACAACTGAAGCAAAACCTGAACTTAGTTTCTAGTCATTTATCAAATAAC AACACTGATGAGTGGTGCTTCACAAAAGGCCTTCCTTGCACACAAAATCCTGAATATCGTTCCTTGTTCATAAACTGTGGAGGGGGCAGTGGGCCTTTTA ACGATGATACTTATGAAGGAGACTTAACTGATGGTGGGCCAGTTGCATTTTCCTTTCTACCAGGAAAATGGGGTTATAGCAGTACTGGGACTTATATGGA GAACAATTCAGTTCAAACTTCCATAGCAAAAAATGATTTTAATCTGGGTGTGACAGGAGTTTATGAAACTGCTCGCCTTGCTCCGCAGTCACTGAAATAC TATGCCCTGTGTTTGCCAAAGGGAAAGTATAAAGTGCAGCTCCACTTTGCGGAAATTATGTATTCTAATGATCAGACATACAGAAGCCTTGGGAGGCGCA TATTTGATATATCGATTCAAGGGATCACACTTCGGAAGAATTTCAATATCATGGAGAAAGCTGGAGGAGTTGGCATCGGCATCATTGAGGTATTTGATAA TATAATTGTTAACGGTGGCACACTAGAGATACACTTGTACTGGGCAGGCAAAGGCACTACTTTCGTTCCTAACAGAGGTGTCCATGGACCACTCATATCT GCCATCACAGTGACACCAAAGTTCAAGAACGGATCAGGATTATCAGTTGGAGCTGTAATCGGCATTGTAGCTGCTTCATGTGTACTTGCTGCGCTGTTTT TGCTGCTACTCCGATCGAAAGGTTACCTGGGAGGAAAGGAACTCGTAGACAAAGAACTTCGCGGTCTGGATCTCCAAACTGGTTATTTCACGTTAAGACA AATCAAACATGCTACCAATAATTTCGACACTGCGAATAAGATAGGAGAGGGAGGATTTGGGCCAGTTTACAAGGGTGTATTGTCAGATGGTGCTGTAATT GCTGTTAAGCAGCTATCATCCAAATCGAGACAAGGAAACCGTGAATTTGTGAATGAGATAGGCATGATATCTGCCTTGCAACATCCCCATCTCGTGAAGC TTTACGGCTGTTGTATTGAGGGAAACCAGTTGTTGTTAGTATATGAATACTTGGAAAACAATAGTCTTGCGCGCGCACTCTTTGGTCGCGAGGAACACCA GCTTCAACTGGACTGGCAAACAAGAAGGAAGATATTGTTGGGTATTGCGAAGGGGTTATCATATCTTCATGAAGAATCAAGGCTGAAGATTGTGCACAGA GACATAAAGGCAACCAATGTGCTGCTTGATAAGGATCTAAATGCCAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAAAACACTCATATAA GCACGCGAATAGCTGGAACAATAGGTTATATGGCTCCAGAATATGCAATGAGGGGTTACTTGACAGATAAAGCAGATGTTTACAGCTTCGGAGTTGTTGC CTTAGAAATTGTCAGTGGGAAGAGCAACACGAATTACAGGCCGAAAGAGGAGTTTGTTTATCTTCTTGATTGGGCTTATGTCCTGCACGAGAGAAACAAC CTTCTTGAGCTTGTGGATCCAAGGCTTGGTTCAAGCTACTCAAAAGAAGAGGCAATGAAGATGCTGAACTTGGCTCTCCTGTGCACCAACCTATCTCCCT CTCTGAGGCCAGCAATGTCCTCCGTGGTGAGAATGCTTGAGGGCAAGATTCCAGTTCAAGCTCCAATAATCAACCGTGGTAGCATGGACCAGGAAGCAAG GTTCAAAGCCTTCGAGCTTTTATCACAGGATAGTGTCTCCACTCTCTCTCAGAGCAGTCAGGTGCAGAGCAGAAGCATATCAAGGGATGGACCATGGGTA GATTCCTCATATTCCCTCCAAAGTAATGATGAGACTAAGGATCTTTATCCCATCAACGCAGATTGA
AA sequence Show only first row Show all	>Potri.001G385300.1 pacid=42788849 polypeptide=Potri.001G385300.1.p locus=Potri.001G385300 ID=Potri.001G385300.1.v4.1 annot-version=v4.1 MALWPSLLSKTLSVLVSGFVVLNCFAVDKFGSHAQVVAPLLPQDEVQTLQNISNKLNISNWATINRTSCGSAQWNQTIDSKTESIVTCNCTFENGSVCHV TSISVKGFNLNGVLPEELGDLPHLLEIDLARNYISGTIPPRLAQLPNLKILSLIVNRLTGPIPLEIGNITTMEELVLDDNLLGGSLPPELGNLTSLKRLV LSSNNFTGSIPETLGNLKNLTEFMIDGSELSGKIPEFIGNWINIEKLDLQGTSMEGPIPSSISLLTSLKSLRISDLNGSSSTFPNLQAMKNLENLILRNC LITDSIPDYIVNMSSLNILDLSFNKLTGRISNFTNLESRTVFLNNNLLTGEVPNWALNNRKQLDLSYNNFTWSALEGSALGGCQQLKQNLNLVSSHLSNN NTDEWCFTKGLPCTQNPEYRSLFINCGGGSGPFNDDTYEGDLTDGGPVAFSFLPGKWGYSSTGTYMENNSVQTSIAKNDFNLGVTGVYETARLAPQSLKY YALCLPKGKYKVQLHFAEIMYSNDQTYRSLGRRIFDISIQGITLRKNFNIMEKAGGVGIGIIEVFDNIIVNGGTLEIHLYWAGKGTTFVPNRGVHGPLIS AITVTPKFKNGSGLSVGAVIGIVAASCVLAALFLLLLRSKGYLGGKELVDKELRGLDLQTGYFTLRQIKHATNNFDTANKIGEGGFGPVYKGVLSDGAVI AVKQLSSKSRQGNREFVNEIGMISALQHPHLVKLYGCCIEGNQLLLVYEYLENNSLARALFGREEHQLQLDWQTRRKILLGIAKGLSYLHEESRLKIVHR DIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLHERNN LLELVDPRLGSSYSKEEAMKMLNLALLCTNLSPSLRPAMSSVVRMLEGKIPVQAPIINRGSMDQEARFKAFELLSQDSVSTLSQSSQVQSRSISRDGPWV DSSYSLQSNDETKDLYPINAD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385300 [exp]	0	1
AT3G06130			Heavy metal transport/detoxifi...		Potri.005G036300 [exp]	2.64	0.9118
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	5.09	0.8763
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	6.78	0.8654
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.016G097400 [exp]	8.24	0.8979	Pt-DOGT1.1
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	9.94	0.8789
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.001G408700 [exp]	10.24	0.8301	MYB.52,MYB219
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Potri.001G234200 [exp]	10.58	0.8602
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	12.04	0.8598
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.010G036400 [exp]	13.41	0.8906	Pt-ZFP5.2
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.002G024700 [exp]	14.14	0.8309

Compare expression of checked genes

Potri.001G385300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.