Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14840 392 / 3e-128 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 359 / 5e-116 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 354 / 3e-114 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 348 / 1e-111 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 346 / 1e-111 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 331 / 1e-105 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 319 / 8e-101 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G29740 313 / 4e-98 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 299 / 3e-93 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 263 / 6e-80 Leucine-rich repeat transmembrane protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G385200 [exp] 583 / 0 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 387 / 2e-126 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072300 [exp] 377 / 2e-122 AT1G29750 1024 / 0.0 receptor-like kinase in flowers 1 (.1.2) Potri.011G106400 [exp] 367 / 7e-119 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385900 [exp] 358 / 1e-118 AT1G53440 889 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025800 [exp] 359 / 3e-118 AT1G53440 1010 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 365 / 4e-118 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G009700 [exp] 360 / 1e-116 AT3G14840 894 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.003G026325 [exp] 359 / 6e-116 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010951 [exp] 357 / 4e-116 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 360 / 2e-115 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 341 / 5e-109 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 332 / 1e-107 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 338 / 5e-107 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 333 / 3e-106 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10038153 [exp] 325 / 1e-102 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10031199 [exp] 273 / 2e-83 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 268 / 3e-82 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10004825 [exp] 134 / 7e-36 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G385500.2 pacid=42787740 polypeptide=Potri.001G385500.2.p locus=Potri.001G385500 ID=Potri.001G385500.2.v4.1 annot-version=v4.1 ATGGACGATGCCCGTTCTTCAGATTCCTACACATGGACGAATGCAACCAAACTCTCCGCAAATACTTCAGCACTTTACATGGATGCACGCCTTTCTCCAA TCTCTCTGACTTATTATGGTTTCTGTATGGGAAATGGGAGCTACACAGTTACCCTTCACTTTGCAGAGATAACGTTTACTGATGACAAGACACACAGCAG TCTTGGCAGGCGATTTTTTGATATCTATATCCAGGGAAAGCGTGTACAAAAGGATTTCAGTATCCAGGAAGAAGCAGGCGGTGTTGGTAAGGCAATTATA AAAAATTTTACTGCCATTGTAACTGGAAATGCATTGGAGATACGCTTTTATTGGGCTGGAAAAGGGACACCTGGGGTGCCTGTTAGAGGAGTTTATGGAC CTCTCATATCGTCTATTTCTGTGACACCTGATTTTGTACCTCCTTCAGAAAATAGCAGAAGTAATGGTACATCTGTTGGCACTGTGGCTGGCATTGTGGC TGCAGTAGTGGTTGTCATCTTCCTGATTCTAGGAATTCTCTGGTGGAAAGGTTGTTTAGGACAGAAGATCAGTATGCGTCATGATTTGAAGGGCCTAGAA TTAAAAACAGGTTCATTTACATTGAGGCAAATTAAAGCTGCTACAAACAACTTCGATCCTGCTAATAAAATTGGAGAAGGTGGTTTTGGTCCTGTTTACA AGCTTTCCTCGAAATCAAAACAAGGAAACCGTGAGTTTGTGAATGAGATTGGCATGATTTCTGCTCTGCAACACCCTCATCTTGTAAAGCTTCACGGATG CTGCATTGAAGGCAATCAATTATTGTTGGTGTATGAGTACATGGAAAAGAACAGCCTTGCTTGTGCTTTGTTTGGTCCTGAAGAATACCAGCTGAATTTG GAGTGGGCAACAAGGCACACGATTTGTGTTGGTATAGCAAAAGGTTTAGCTTCTCTTCATGAAGAATCGTGCATAGAGACATCAAGGCCACCAATGTTTT GCTTGATAAGAATCCAAACCCGAAGATACCTGACTTTGGGCTAG
AA sequence Show only first row Show all	>Potri.001G385500.2 pacid=42787740 polypeptide=Potri.001G385500.2.p locus=Potri.001G385500 ID=Potri.001G385500.2.v4.1 annot-version=v4.1 MDDARSSDSYTWTNATKLSANTSALYMDARLSPISLTYYGFCMGNGSYTVTLHFAEITFTDDKTHSSLGRRFFDIYIQGKRVQKDFSIQEEAGGVGKAII KNFTAIVTGNALEIRFYWAGKGTPGVPVRGVYGPLISSISVTPDFVPPSENSRSNGTSVGTVAGIVAAVVVVIFLILGILWWKGCLGQKISMRHDLKGLE LKTGSFTLRQIKAATNNFDPANKIGEGGFGPVYKLSSKSKQGNREFVNEIGMISALQHPHLVKLHGCCIEGNQLLLVYEYMEKNSLACALFGPEEYQLNL EWATRHTICVGIAKGLASLHEESCIETSRPPMFCLIRIQTRRYLTLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385500 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G386000 [exp]	1.00	0.9701
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	4.00	0.8642
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	5.74	0.8999
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	7.41	0.8604
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	8.12	0.8519
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.006G258900 [exp]	9.79	0.8566
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	11.31	0.8396
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	12.72	0.8534
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.008G213000 [exp]	12.96	0.8254
AT1G03670			ankyrin repeat family protein ...		Potri.018G078200 [exp]	13.49	0.8470

Compare expression of checked genes

Potri.001G385500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.