Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53430 273 / 6e-84 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 262 / 1e-79 Leucine-rich repeat transmembrane protein kinase (.1) AT3G14840 201 / 1e-57 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 187 / 8e-53 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 177 / 3e-49 RKF1 receptor-like kinase in flowers 1 (.1.2) AT1G07650 171 / 4e-47 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 151 / 2e-40 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 150 / 4e-40 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56130 147 / 4e-39 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 146 / 1e-38 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G026325 [exp] 484 / 8e-164 AT1G53440 1195 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 474 / 2e-160 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025566 [exp] 407 / 7e-138 AT1G53440 754 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385300 [exp] 412 / 1e-136 AT1G53440 1134 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385400 [exp] 410 / 2e-135 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G386300 [exp] 404 / 2e-133 AT1G53440 1120 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G106400 [exp] 371 / 1e-120 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385200 [exp] 224 / 7e-66 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 209 / 1e-60 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005550 [exp] 334 / 1e-106 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 304 / 7e-96 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 303 / 2e-94 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 285 / 1e-87 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 185 / 3e-52 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031374 [exp] 179 / 4e-50 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10010951 [exp] 175 / 8e-49 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031199 [exp] 127 / 4e-32 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10027688 [exp] 113 / 2e-27 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10008712 [exp] 112 / 6e-27 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G385750.1 pacid=42791345 polypeptide=Potri.001G385750.1.p locus=Potri.001G385750 ID=Potri.001G385750.1.v4.1 annot-version=v4.1 ATGATTGAAGTTCCTGAATTGTATGTAACAGTGCAAACTCTTCAAAACATATCCAACAAGTTGAACATCAGCAACTGGGCCACCATCAATCGAACTTCTT GCGGTAGTGCACAGTGGAACCAGACCATCGACAGCAAAACTGAAAGCATTGTTACATGCAACTGTACATTTGAGAATGGCTCCGTCTGTCATGTCACTAG CATAAGCGTGAAAGGTTTTAATTTGAATGGAGTTCTCCCAGAGGAACTAGGAGACCTTCCTCATCTGCTTGAAATTGATCTGACTCGCAACTACATTAAT GGAACAATCCCTCCAAGACTTGCTCAGCTCCCTAACCTTCAGATTTTGTCTCTCATCGTTAACCGTCTCACCGGCCCGATTCCCCCGGAAATAGGCAACA TTACCACACTGGAGGAGCTGGTCCTGGAAGATAATCTGCTAGGAGGGCCTCTTCCTCCAGACCTTGGAAATTTGACAAGCTTAAGAAGACTTCTTCTTTC CGCAAACAATTTTACAGGAACAATACCAGACACATTTGGCAATTTAAAGAATTTAAATGAGTTTAGGATAGATGGAAGTGAACTGTCAGGGAAGATACCG ACTTTATTGGGAACTGGACCAACATTACGACATTTGGTATATTTCTCTTGCAGGGATTTGCAAGGAACATCCATGGAGGGTCCTATTCCCTCTACCATTT CACTGTTAAAAAAATTAACAACTTTGAGAATATCGGATTTGAAAGGATCCAGTTCAACTTTCCCTGATCTGAAAGATATGACAAAAATGGAAAAACTAAA TTGCTCATTGACTGGTTCAATCCAAGAATACCTTGGAAATATGGCAGACCTAGATACTCTAGATCTGAGCTTTAACAAGTTGACAGGCCAGATTCCTGGC CCATTAGAGAGTTTGAAAAAAAATATAAAGTTCATGTTTCTGAATAACAACTCACTAACTGGAGAAGTGCCTGCTTGGATACTGGGAAGCAGGAAAGACT TGTGA
AA sequence Show only first row Show all	>Potri.001G385750.1 pacid=42791345 polypeptide=Potri.001G385750.1.p locus=Potri.001G385750 ID=Potri.001G385750.1.v4.1 annot-version=v4.1 MIEVPELYVTVQTLQNISNKLNISNWATINRTSCGSAQWNQTIDSKTESIVTCNCTFENGSVCHVTSISVKGFNLNGVLPEELGDLPHLLEIDLTRNYIN GTIPPRLAQLPNLQILSLIVNRLTGPIPPEIGNITTLEELVLEDNLLGGPLPPDLGNLTSLRRLLLSANNFTGTIPDTFGNLKNLNEFRIDGSELSGKIP TLLGTGPTLRHLVYFSCRDLQGTSMEGPIPSTISLLKKLTTLRISDLKGSSSTFPDLKDMTKMEKLNCSLTGSIQEYLGNMADLDTLDLSFNKLTGQIPG PLESLKKNIKFMFLNNNSLTGEVPAWILGSRKDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53430			Leucine-rich repeat transmembr...		Potri.001G385750 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	1.41	0.8808
AT4G27300			S-locus lectin protein kinase ...		Potri.011G125201 [exp]	2.44	0.8727
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154600 [exp]	3.46	0.8520
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	3.87	0.8641
AT1G16670			Protein kinase superfamily pro...		Potri.001G393200 [exp]	4.00	0.8199
AT5G57850			D-aminoacid aminotransferase-l...		Potri.018G039000 [exp]	5.91	0.8317
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	9.48	0.8183
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Potri.018G090700 [exp]	12.48	0.7428	Pt-HPT1.2
AT1G03670			ankyrin repeat family protein ...		Potri.018G078200 [exp]	13.41	0.8239
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	14.49	0.8106

Compare expression of checked genes

Potri.001G385750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.