Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07650 193 / 3e-57 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 192 / 6e-57 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 179 / 1e-52 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 177 / 1e-51 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 168 / 1e-48 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29730 135 / 6e-37 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 134 / 7e-37 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 124 / 3e-33 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 122 / 1e-32 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29740 122 / 2e-32 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G385200 [exp] 350 / 2e-115 AT3G14840 1171 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.003G026150 [exp] 229 / 3e-78 AT3G14840 104 / 5e-27 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.004G135500 [exp] 192 / 6e-57 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073191 [exp] 180 / 1e-56 AT1G07650 370 / 1e-120 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073066 [exp] 182 / 2e-56 AT1G07650 488 / 1e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G073316 [exp] 181 / 4e-56 AT1G07650 487 / 4e-164 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.011G072941 [exp] 189 / 8e-56 AT1G29720 947 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025632 [exp] 178 / 8e-56 AT1G53440 461 / 3e-155 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072741 [exp] 185 / 2e-54 AT1G29740 1014 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031374 [exp] 183 / 1e-53 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10041937 [exp] 160 / 1e-45 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005550 [exp] 159 / 2e-45 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 150 / 3e-42 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042505 [exp] 150 / 4e-42 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 129 / 1e-34 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10015239 [exp] 124 / 3e-33 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10031199 [exp] 117 / 8e-31 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10042460 [exp] 103 / 2e-26 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10026207 [exp] 103 / 2e-26 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G386000.1 pacid=42793205 polypeptide=Potri.001G386000.1.p locus=Potri.001G386000 ID=Potri.001G386000.1.v4.1 annot-version=v4.1 ATGGCACCTGAATATGCAATGCGGGGTTATTTGTCTGACAAAGCAGATGTCTACAGTTTTGGAATCGTTGCCTTGGAAATTGTCAGTGGGAAGAGCAATA CTAGTCATCGAACAAAGGAGGACACTGTTTATCTTCTTGATTGGGCATTGGTTTTGAAGGAGAAAGGGACTTTGCTGGAGCTCGTTGATCCAAAACTAGG CCAAGACTACAACAAAGAAGAGGCGATAACAATGATTAATGTGGCTCTCCTCTGCAGTAATGTCTCTGCAGCAGTTAGGCCTGCGATGTCTTCAGTAGTA AGCATGCTCGAAGGAAAGGCTGTTGTTCAAGATATTGGCATTCCAGATAAAAGCATGTCAACGGATGAGAAGAAGATTGAACAAATGAGGAGGCATTTTC AAGTTATCAACGAACAGGAAATAAGTGAGACTCGTACTCTGTCAATGGATGGACCGTGGACTGCTGCTTCTACATCTGCTGGTGATCTTTATCCAGTCTC TTTGGTTTCTGACTATTTGAAGGGTAGAGATTAG
AA sequence Show only first row Show all	>Potri.001G386000.1 pacid=42793205 polypeptide=Potri.001G386000.1.p locus=Potri.001G386000 ID=Potri.001G386000.1.v4.1 annot-version=v4.1 MAPEYAMRGYLSDKADVYSFGIVALEIVSGKSNTSHRTKEDTVYLLDWALVLKEKGTLLELVDPKLGQDYNKEEAITMINVALLCSNVSAAVRPAMSSVV SMLEGKAVVQDIGIPDKSMSTDEKKIEQMRRHFQVINEQEISETRTLSMDGPWTAASTSAGDLYPVSLVSDYLKGRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07650			Leucine-rich repeat transmembr...		Potri.001G386000 [exp]	0	1
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385500 [exp]	1.00	0.9701
AT1G03670			ankyrin repeat family protein ...		Potri.018G077500 [exp]	2.00	0.9286
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	5.00	0.8713
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	5.47	0.8581
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	7.00	0.8607
AT5G20670			Protein of unknown function (D...		Potri.012G042000 [exp]	7.74	0.8791
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.008G213000 [exp]	10.00	0.8282
AT1G03670			ankyrin repeat family protein ...		Potri.018G078200 [exp]	17.97	0.8396
AT3G49810			ARM repeat superfamily protein...		Potri.014G014300 [exp]	22.84	0.8655
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	23.36	0.8184

Compare expression of checked genes

Potri.001G386000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.