Plant FIBer expression Database

Potri.001G386550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G075100
[exp]
164 / 6e-54 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G386550.1 pacid=42789210 polypeptide=Potri.001G386550.1.p locus=Potri.001G386550 ID=Potri.001G386550.1.v4.1 annot-version=v4.1
ATGGAAGAGAGCAGTGCTACAACCTTTCCAATCATGAGAGCTAATGATTGGAGAATACCGATCAAGGAATATCTACTCACATGGACTGTGCCTTCAGACA
GACTAGAAGCCATTAAGCTGACTAAGAGAGCATCGGGTTACTGCATAATTGACGGGCTATTATATAGGAGATCCACATCATCACCGCTCCTCAAGTGCTT
GTCCTCAGAGGAAAACATCTATGTTTTGAGAGAGATGCACGAGGGAGTCTATGGATTGCATGCAGGTTTTAGAGCCTTGGCTGCTCAGATCACAAAAGCA
GGCTTTTTATTGGCCCACCATATTACAAGATTCCAAAGACCTAGTGAAGAAGTGTGA
AA sequence
>Potri.001G386550.1 pacid=42789210 polypeptide=Potri.001G386550.1.p locus=Potri.001G386550 ID=Potri.001G386550.1.v4.1 annot-version=v4.1
MEESSATTFPIMRANDWRIPIKEYLLTWTVPSDRLEAIKLTKRASGYCIIDGLLYRRSTSSPLLKCLSSEENIYVLREMHEGVYGLHAGFRALAAQITKA
GFLLAHHITRFQRPSEEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G386550
[exp]
0 1
AT3G16360 AHP4 HPT phosphotransmitter 4 (.1.2... Potri.001G464900
[exp]
7.54 0.9904
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.012G113433
[exp]
7.93 1.0000
AT1G28640 GDSL-like Lipase/Acylhydrolase... Potri.004G225100
[exp]
13.49 0.7558
AT3G48420 Haloacid dehalogenase-like hyd... Potri.014G003916
[exp]
15.00 0.7602
AT3G24225 ESR19, CLE19, A... EMBRYO SURROUNDING REGION 19, ... Potri.001G016100
[exp]
15.55 0.8226
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.012G114266
[exp]
15.87 0.8691
AT1G43760 DNAse I-like superfamily prote... Potri.012G063901
[exp]
27.34 0.6725
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.012G112800
[exp]
27.38 0.6932
AT1G19780 ATCNGC8 cyclic nucleotide gated channe... Potri.001G043900
[exp]
30.41 0.6612 CNGC7.1
Potri.002G113501
[exp]
32.86 0.5793

Potri.001G386550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.