Plant FIBer expression Database

Potri.001G386700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14830 586 / 0 unknown protein
AT1G53450 568 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G026500
[exp]
862 / 0 AT3G14830 593 / 0.0 unknown protein
Potri.011G106600
[exp]
800 / 0 AT3G14830 598 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041938
[exp]
600 / 0 AT3G14830 523 / 0.0 unknown protein
Lus10005552
[exp]
573 / 0 AT3G14830 501 / 5e-176 unknown protein
Lus10014986
[exp]
50 / 2e-06 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info
Representative CDS sequence
>Potri.001G386700.1 pacid=42792294 polypeptide=Potri.001G386700.1.p locus=Potri.001G386700 ID=Potri.001G386700.1.v4.1 annot-version=v4.1
ATGTCGGTAGAAAGATCATTTGAAGCATGGGAGGAGGTCCAAAGGCATGGCCAGGACTTCGCAGACCGGCTAGCTCAAGGCTTCACAGGCCTTATACAGT
CACATATAACTTACCCTTCTGCGTTTTCTTGGCCAAACCCTCCAAAATCGAAGCTTTTCGATGTGGAGTTTCCGGGACACGGTTTTAGTAAAGGGGATTT
TGGGGTTTTGACTGATAATTCTGGGATAAATGGGTTTTCGGCGATTTTGGATGTTGGAAATAGGATTGGACAAGCTGGGGCTGATTTTGGAGCGGCTTTG
AATGGGATGGTGCATCAGTTTTTTAGGAGATTGCCGGTGCCGTTTAAGCAGGATGAGACTGGGGGGGTTGGGGTGAGGATGGATGGTAAAAGTAGTGAGG
TGGGGTTGGGTTTGGAGGGAGAGTTGGGTTTGGTTAGTGAGAGGTTGAGGGATTTTGGGTTTGTGGAGGATAGTGGTGGTGGTGGTGGAGTGGATGGCTT
GTTGGATGAGGAGATTGGTGGGTTAAATTTGAAGGGTGTGGGATATCCTGGTAAACCACAGGGGACCATAAACATTACCTCAACTTATGACAGCAGAACT
CACAACATTGAGAGTTCTTTGGTTGCAAGGGGAGATTTATGGAGAGTAGAGGCATCACATGGAAGTTCCACGTCAGAAAATGATAATTCATCTCTGTTCC
TTGTCCAGCTTGGACCTGTGCTGATTTTGCGTGATTCAACCTTTCTTCTGCCCGTGCATCTGTCAAAGCAACACTTGCTTTGGTATGGCTATGATAGAAA
GAGTGGAATGCATTCTCTGTGTCCAGCTGTGTGGTCAAAGCATCGAAGGTGGTTGTTAATGTCAATGCTCTGTCTCAATCCTATAGCTTGTTCATTTGTG
GATTTACAGTTTCCAAATGGGCAATTGACTTATGTATCTGGTGAGGGGCTGTCTACCAGTGCTTTTGCACCTCTTTGCGGAGGTCTTCTTCAAGCTCAAG
GGCAATATCCTGGGGAAATGAGATTCAGCTTCTCTTGTAAGAATAAGTGGGGAACACGAATCACACCGATGGTACAATGGCCTGACAAATCCTTTACATT
AGGTTTTGCACAATCTTTGGCATGGCGGAGATCTGGTCTTATGGTGAGACCAGCTGCTCAGTTCAGTTTGTGCCCCACTTTTGGCGGAAGCAATCCTGGG
TTGCATGCAGAACTGATTCATTCAGTGAATGACCATTTGAATCTGATATGTGGCTGTGCTGCGACGACACACCCTTCCGCATTTGCATCGCTATCAATTG
GCAGGTCTAAGTGGAATGGTAATGTTGGGAGCTCAGGATTTGTTCTGAGACTCGATGCTCCTCTCTCCAATGTTGGCCAACCTTCCTTTTCTGTTCAGAT
AAATAGTGGTATTGAGTTTTGA
AA sequence
>Potri.001G386700.1 pacid=42792294 polypeptide=Potri.001G386700.1.p locus=Potri.001G386700 ID=Potri.001G386700.1.v4.1 annot-version=v4.1
MSVERSFEAWEEVQRHGQDFADRLAQGFTGLIQSHITYPSAFSWPNPPKSKLFDVEFPGHGFSKGDFGVLTDNSGINGFSAILDVGNRIGQAGADFGAAL
NGMVHQFFRRLPVPFKQDETGGVGVRMDGKSSEVGLGLEGELGLVSERLRDFGFVEDSGGGGGVDGLLDEEIGGLNLKGVGYPGKPQGTINITSTYDSRT
HNIESSLVARGDLWRVEASHGSSTSENDNSSLFLVQLGPVLILRDSTFLLPVHLSKQHLLWYGYDRKSGMHSLCPAVWSKHRRWLLMSMLCLNPIACSFV
DLQFPNGQLTYVSGEGLSTSAFAPLCGGLLQAQGQYPGEMRFSFSCKNKWGTRITPMVQWPDKSFTLGFAQSLAWRRSGLMVRPAAQFSLCPTFGGSNPG
LHAELIHSVNDHLNLICGCAATTHPSAFASLSIGRSKWNGNVGSSGFVLRLDAPLSNVGQPSFSVQINSGIEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G14830 unknown protein Potri.001G386700
[exp]
0 1
AT5G49900 Beta-glucosidase, GBA2 type fa... Potri.019G072800
[exp]
1.41 0.7574
AT3G14830 unknown protein Potri.003G026500
[exp]
2.44 0.7587
AT4G19860 alpha/beta-Hydrolases superfam... Potri.012G121596
[exp]
4.58 0.7160
AT2G11890 adenylate cyclases (.1.2) Potri.003G198200
[exp]
6.32 0.7281
AT5G20260 Exostosin family protein (.1) Potri.018G125058
[exp]
6.63 0.6991
AT1G09840 AtHIR1, ATSK41 hypersensitive induced reactio... Potri.004G225700
[exp]
6.70 0.7131 ASK4.1
AT2G34900 GTE1, GTE01, IM... IMBIBITION-INDUCIBLE 1, GLOBAL... Potri.001G073800
[exp]
9.16 0.6928
AT4G39870 TLD-domain containing nucleola... Potri.007G092700
[exp]
10.77 0.6501
AT2G36290 alpha/beta-Hydrolases superfam... Potri.010G237700
[exp]
11.83 0.7118
AT5G23750 Remorin family protein (.1.2) Potri.003G124400
[exp]
17.23 0.7387

Potri.001G386700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.